PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G073400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 329aa    MW: 35907.7 Da    PI: 8.8722
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G073400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.25.7e-311972255
             G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        prlrWtp LH++Fv+a+++LGG+++AtPk++l+lm+v gLt++hvkSHLQ+YR 
  Brast02G073400.1.p 19 PRLRWTPALHRCFVHAIRSLGGQHRATPKRVLQLMGVGGLTISHVKSHLQMYRN 72
                        8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-291574IPR009057Homeodomain-like
PROSITE profilePS5129413.2711575IPR017930Myb domain
SuperFamilySSF466895.55E-151773IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-231972IPR006447Myb domain, plants
PfamPF002497.5E-82071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTMARAMAGV RQYNRSKVPR LRWTPALHRC FVHAIRSLGG QHRATPKRVL QLMGVGGLTI  60
SHVKSHLQMY RNMRTDLGMQ GMMQAQQWDQ EHRYGGMEVC ITDTQLQHRD HECDVPFYDS  120
PKPRKEPPVL LRPNLKRTTA SETEARRERH GKEEAGASPT SQLGSGQGEG IRERDRSSSS  180
RLHCCSLGYV QPRAPGIKQK RQQREPWMPE LHLHDNAQHA VPSGLEFLGF AVAPPPPAAC  240
RGGLPFEVCT VPGQPNEPMS TSTIHAAGFL NPPSSAADHE DGCSLSLSLA LTLCPAGSGC  300
LQAPSSRESS SSGASRISLD LSLSTLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G073400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689103e-68BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
GenBankHQ8587023e-68HQ858702.1 Zea mays clone UT1158 G2-like transcription factor mRNA, partial cds.
GenBankKJ7268133e-68KJ726813.1 Zea mays clone pUT3230 G2-like transcription factor (GLK48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230232.20.0uncharacterized protein LOC104582408
TrEMBLA0A2K2DUQ41e-179A0A2K2DUQ4_BRADI; Uncharacterized protein
STRINGBRADI1G71910.11e-177(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-29G2-like family protein