PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G066800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 26443 Da PI: 6.8619 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6e-19 | 49 | 95 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l vk++G ++W+ I+ ++ gRt+k+c+ rw ++l Brast02G066800.1.p 49 KGPWSPEEDEQLTSMVKKHGADHWSYISTGVP-GRTGKSCRRRWCNHL 95 79******************************.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.935 | 44 | 99 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-17 | 46 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-15 | 48 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-17 | 49 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 50 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.57E-16 | 51 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MPQSFLLYAC VLLLAASTLP ISCSSLQPIH KSPAISQYCS HKQAPPMGKG PWSPEEDEQL 60 TSMVKKHGAD HWSYISTGVP GRTGKSCRRR WCNHLSLAVQ DPRPFTAEEH ALSIRESQCQ 120 SAAAQFAHTN VAAAASAAAA AAENNLPVWG KGKAVVIDVE DDEPPPAKRQ RVSNEGGGTS 180 AGGDADAWLT LSLGMPLQQQ PVEQAPVAPV ATETPAVMAA MREMVSAEVE RQARQLVVSV 240 FMAARGGQP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G066800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0Q3LJ83 | 5e-89 | A0A0Q3LJ83_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP49957 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 5e-21 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G066800.1.p |