PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G061300.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 241aa    MW: 26315.2 Da    PI: 9.5645
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G061300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.91.6e-33132188158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq Rakle+e+kl  ksrkpylheSRh hA++R+Rg+gGrF
  Brast02G061300.2.p 132 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 188
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.3E-38130191IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.916131191IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.1E-29133188IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-24134156IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860136156IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-24165188IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MRRKEDMHEN GTIMIQFGHQ VPNYDSSASD SPQEVSGMSE GSLNEQNEQS GRRDGYTNND  60
EGKMMSALSL GNSETTYAQP KPDRSHPFAV AYPYADPFYG GAYGSHAVMH PQIVGMVPSS  120
RVPLPIEQAA AEEPIYVNAK QYHAILRRRQ LRAKLEAENK LVKSRKPYLH ESRHLHAMKR  180
ARGTGGRFLN SKQQPEGSSG SDASTRSGNA GIPANGGMFS KHDHALSSSG DLQYRVRGGA  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-23132194264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G061300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3553721e-158AK355372.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1019N07.
GenBankAK3605281e-158AK360528.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1119O03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558692.11e-171nuclear transcription factor Y subunit A-7
TrEMBLA0A0Q3HKF31e-170A0A0Q3HKF3_BRADI; Uncharacterized protein
STRINGBRADI1G72960.11e-170(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.14e-43nuclear factor Y, subunit A6