PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G060300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 206aa MW: 21787.9 Da PI: 8.4976 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 51.4 | 2.6e-16 | 9 | 54 | 3 | 52 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnF 52 ++rY C++NhAa+l gh +DGC f+p + ++l+C ACgCH nF Brast02G060300.1.p 9 GARYLHCMRNHAAALNGHCLDGCTAFLPPPVG----DSLHCYACGCHPNF 54 689*************************9444....6************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.7E-13 | 10 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-8 | 11 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.683 | 12 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.86E-5 | 117 | 166 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 118 | 167 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSDVVSAKGA RYLHCMRNHA AALNGHCLDG CTAFLPPPVG DSLHCYACGC HPNFPLYVPA 60 VPPPPQLQPM MAAASGSDAD TVPPPPPRQQ LLPLPAPAPA LVAAPPQQQP APVPAPPAQK 120 TKMWELSERI GWSYHQRNMA AIEEGCREMD VTIRTFKNWM GNNKRKNQIE ARRRASDNNN 180 ATPQAAASSS SPAGLAVPPS PPASA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G060300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230244.1 | 7e-42 | zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A0Q3K0M2 | 2e-40 | A0A0Q3K0M2_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22756 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-11 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G060300.1.p |