PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G060000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 75aa MW: 8207.81 Da PI: 8.9593 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 57.2 | 3.9e-18 | 8 | 51 | 2 | 50 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHR 50 +k++Y +ClkNhA++ G h vDGC Ef+p g+ l C ACgCHR Brast02G060000.1.p 8 KKMVYLDCLKNHAVAPGRHCVDGCMEFVPPMGN-----NLSCVACGCHR 51 5789*************************9555.....5*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-8 | 5 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.5E-13 | 10 | 55 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 18.544 | 12 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MAFVVSVKKM VYLDCLKNHA VAPGRHCVDG CMEFVPPMGN NLSCVACGCH RGCHRDFHRR 60 LLVKVRVPVS VSQP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G060000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230247.1 | 1e-27 | zinc-finger homeodomain protein 2 | ||||
TrEMBL | I1H956 | 3e-26 | I1H956_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G73020.1 | 5e-27 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP49958 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-13 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G060000.1.p |