PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G058200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 163aa MW: 18145.7 Da PI: 9.1691 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.2 | 2.2e-06 | 90 | 129 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +i + ++L++llP+a ++ ++ + +L++++ YI+sL Brast02G058200.1.p 90 QISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCSYIRSL 129 789999*********8899*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-7 | 74 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.756 | 75 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-8 | 89 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MHACTLSRTQ SHLLYWPPSR LSHQHFFSCC SKLPPHLQGQ CTSSMTLSAS TSTSHICTLA 60 RQLLALTLSK MSSRRSRSRQ SGSSRITDEQ ISDLVSKLQD LLPEARLRSN DRVPSSRVLQ 120 ETCSYIRSLH REVDDLSERL SELLATSDMS SAQAAIIRSL LM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G058200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101485 | 1e-114 | FP101485.1 Phyllostachys edulis cDNA clone: bphyst035e07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752677.1 | 2e-55 | transcription factor ILI6 isoform X3 | ||||
Refseq | XP_024313620.1 | 2e-55 | transcription factor ILI6 isoform X3 | ||||
TrEMBL | A0A0Q3LJH9 | 3e-45 | A0A0Q3LJH9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G73160.1 | 6e-55 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2675 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 7e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G058200.1.p |