PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G032500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 353aa    MW: 37706 Da    PI: 4.8423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G032500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-11181223754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N+++++Lr+++P  +      K++  +iL  +++Y+++L
  Brast02G032500.1.p 181 MAERRRRKRLNDRLSNLRSIVPRiS------KMDRTSILGDTIDYVNKL 223
                         79*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16179253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-12180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-4181228No hitNo description
PfamPF000107.3E-9181223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14181244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDQLDEESFL DELMSQPREA PWQACPAGPQ GGMMMMSDLL FYGAAEAKSG MDDDMDVAPF  60
EDLRAPMPMP APAPPGPDEQ LISFDCLSEV CNPYRSCVGV VPAAGRAPTD PLQCLHDAMK  120
EDETSRDKAH LGGACGGPSS LSPAPFVFGS GGSAGGASSV SMTGVRHRSK LHGSIPSKNL  180
MAERRRRKRL NDRLSNLRSI VPRISKMDRT SILGDTIDYV NKLTERIKVL EEEIGAAPED  240
LNLLNTMKDF SSGCRSELPA RNSTKFGVEK QGGGGTRIEM CCPANPGVLL STLGALEALG  300
LEIEQCVASC FSDFCMQASC LQVVVEGKKQ GMSTDEIKQA LFRSAGYGGR CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G032500.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558868.11e-168transcription factor bHLH61
SwissprotQ9LXA91e-52BH061_ARATH; Transcription factor bHLH61
TrEMBLI1HA081e-166I1HA08_BRADI; Uncharacterized protein
STRINGBRADI1G76030.11e-167(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.12e-39bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]