PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G020500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 283aa    MW: 30133.4 Da    PI: 8.8243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G020500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14102153155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  Brast02G020500.1.p 102 QRMTHIAVERNRRRLMNDHLASLRSLIPSD---YIPRGDQATVVGGAIDYVKQLE 153
                         79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-1493161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-12100156No hitNo description
PROSITE profilePS5088814.589101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13102156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MERMQLQGPI ITSLWGEQAA AAATQVPFLA LLQGAMAEEL QEEGDNKRRQ HALAEDAGLL  60
ESCCATQAAG GHGKQQRRRR KRARAAAPEA KRKKPAEEAE CQRMTHIAVE RNRRRLMNDH  120
LASLRSLIPS DYIPRGDQAT VVGGAIDYVK QLEQQLVALQ AAARRGSVSG SGAGGFVAPQ  180
HTSYSEQGGA AGVDVEAMAA VGGHVRVRVA GRRWPGRLVR AVAAMEDLRL AVLHLAVTSV  240
GRDAVVYCFN LKIEEGCQVA TADEVAAVVH QIFAYAAGVG VC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17793RRRKRARAAAPEAKRKK
27993RKRARAAAPEAKRKK
3102113RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G020500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554703e-86AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562168.11e-138transcription factor bHLH57
TrEMBLA0A0Q3KI571e-136A0A0Q3KI57_BRADI; Uncharacterized protein
STRINGBRADI1G77070.11e-126(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-21bHLH family protein