PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G001800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 337aa    MW: 35840.2 Da    PI: 7.3099
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G001800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.8e-18241275135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Brast02G001800.1.p 241 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 275
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-16235285IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.411235271IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13239273IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.28E-14239299No hitNo description
CDDcd002021.71E-14240287No hitNo description
PfamPF003209.9E-16241275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440241266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAQEWEAAMG MGSSAPHYAV AAASPAMGAP LFNHHGSAYP HSLPHHYHLY GGAGAAADEV  60
AAEPMRVDEM LDLSSHLGAH DFFPGGGSNG AAASNSSSDH HGHGHGHHHS FNLSFADELF  120
VPVPREEAAE LEWLSNFVDD SYPDTPNYPP AVQAAARNGA RQEMLNNNNN NXPPAAVPAG  180
RGARSKRSAA AAAWHALVPR HHQVQEPSPS SSSSSSDQQQ RVSSSPKPAS PKAEHGGVRR  240
CTHCASEKTP QWRTGPLGPK TLCNACGVRY KSGRLVPEYR PAASPTFVLT QHSNSHRKVM  300
ELRRQNEQLG HIAGTVVSPS SSATGEQHMF RDYGVC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G001800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580341e-82AK358034.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1067G03.
GenBankAK3658411e-82AK365841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559045.11e-132GATA transcription factor 2
SwissprotO497418e-53GATA2_ARATH; GATA transcription factor 2
TrEMBLI1HAW61e-131I1HAW6_BRADI; GATA transcription factor
STRINGBRADI1G78540.11e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-45GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]