PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G413800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 22066.8 Da PI: 8.4991 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 22 | 66 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW+++E+e+++da ++G + Wk+I +++ ++t q++s+ qky Brast01G413800.1.p 22 RERWSPDEHERFLDAMLRFGRD-WKKIEEHVR-TKTTVQIRSHAQKY 66 78******************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.49E-17 | 16 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.524 | 17 | 71 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-9 | 19 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-10 | 21 | 69 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.7E-17 | 21 | 69 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-13 | 22 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.27E-9 | 24 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEQTPPGPGK KARKPYTISR PRERWSPDEH ERFLDAMLRF GRDWKKIEEH VRTKTTVQIR 60 SHAQKYFLKV QKLXLAAGLH PIRRLGVTQP QTQGAMMVLH DQPQECPPGA LLQSSIGSSS 120 SSSSLGAPPS CGNTSMDWAS TGSASDAEDD TIPLPLSPDD THFAQVYRFV GDVFDPTTPC 180 QIEAHLQRLK GMDAITVKT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G413800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227459.1 | 1e-111 | protein REVEILLE 5 isoform X1 | ||||
TrEMBL | A0A0Q3H4R9 | 1e-110 | A0A0Q3H4R9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G34840.1 | 1e-102 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-33 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G413800.1.p |