PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G409700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 211aa MW: 23496.1 Da PI: 10.271

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G409700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.5e-09	28	77	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +e+Er RR++++ +L +l+Pk+ + ++ L kA YIk+L Brast01G409700.1.p 28 RKEIERERRQHMKGLCLKLASLIPKQHYSSTDTMTQLGSLDKAASYIKKL 77 589********************64555555*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.461	23	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-10	26	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-12	28	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-6	29	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-5	29	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEEVKGNKGK GVRRSKLKAK SSGMTMERKE IERERRQHMK GLCLKLASLI PKQHYSSTDT 60 MTQLGSLDKA ASYIKKLKAR VDELRQQKNS AETMASLRGV GQSSKMGGRT MLAELEVEEA 120 GEAFLASVRP VVQVRHHDDS SMDVVLICSA KRPIKFHEVI TILEEEGAEV VNANYSINGD 180 KIFYTIHSRA FSSRIGIEVS RVSERLKAFV *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G409700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565225.1	1e-109	transcription factor bHLH162
TrEMBL	I1HB71	1e-108	I1HB71_BRADI; Uncharacterized protein
STRING	BRADI2G00720.1	1e-109	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast01G409700.1.p