PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G409600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 197aa MW: 20989.7 Da PI: 10.2753 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.9 | 1.6e-07 | 24 | 87 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as..........kapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P+ +s + +sk + + L A YI++L+ Brast01G409600.1.p 24 ERKDVEKNRRLHMKGLCLKLSSLVPHhQStsfnsssppaSSSSKDaATQLDQLDSAAAYIRQLK 87 56889*********************666*********84444446****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.432 | 20 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-9 | 22 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.3E-11 | 22 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-4 | 24 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-4 | 26 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MKSRRQQMSD ATSSGGGGCS NKMERKDVEK NRRLHMKGLC LKLSSLVPHH QSTSFNSSSP 60 PASSSSKDAA TQLDQLDSAA AYIRQLKGRI DELRRRKQSR RPGNGVSSSG DGVGMLPVVE 120 VRQQQESAAV DVALVSEAGK PFKLHEVIAA LEEEGAEVVS ASFSAVADKI FYTLHSRAPP 180 LDAAALAHRL RALAAP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G409600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564810.1 | 9e-87 | transcription factor bHLH168 | ||||
TrEMBL | I1HB73 | 2e-85 | I1HB73_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G00740.1 | 3e-86 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 6e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G409600.1.p |