PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G407100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 275aa    MW: 29227.8 Da    PI: 5.3645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G407100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09192235755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Brast01G407100.1.p 192 AVAKVRRERISERLKVLQDLVPNG-----TKVDMVTMLEKAITYVKFLQ 235
                         56799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12186242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-13187239No hitNo description
SuperFamilySSF474594.32E-13188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6193235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MASRHATTRE PHLRTMYDDE PSMSLELFGY HGVVVDGDDD GDTATDLPQL TFVDNFKGGC  60
GSADYYGWAY SASGGTSGAC SSSSSSVLSF EQAGGAGHQL AYNAGTGDDD CALWMDGMAD  120
QHDTAKFGFM DPGMSDASLE IQESSVKPPA KMAQKRACPM KGGETQAAAK KQCGGGKKSK  180
AKVAPTKDPQ SAVAKVRRER ISERLKVLQD LVPNGTKVDM VTMLEKAITY VKFLQLQVKV  240
LATDDFWPVQ GGKAPELSQV KDALDAILSS QHQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G407100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565241.21e-165transcription factor BHLH094
TrEMBLI1HBA81e-163I1HBA8_BRADI; Uncharacterized protein
STRINGBRADI2G01000.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.17e-46ROOT HAIR DEFECTIVE6