PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G397400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 334aa    MW: 36864.1 Da    PI: 6.233
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G397400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.1e-173178148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd ll  +++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Brast01G397400.1.p 31 RGPWTLEEDNLLMSYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 78
                        89********************************************97 PP
2Myb_DNA-binding49.41e-1584127146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Brast01G397400.1.p  84 RGNLSAEEQLLILELHGKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 127
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5992678IPR017930Myb domain
SuperFamilySSF466896.36E-3029125IPR009057Homeodomain-like
SMARTSM007172.2E-133080IPR001005SANT/Myb domain
PfamPF002497.9E-153178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-233285IPR009057Homeodomain-like
CDDcd001671.04E-103378No hitNo description
PROSITE profilePS512942579133IPR017930Myb domain
SMARTSM007172.1E-1483131IPR001005SANT/Myb domain
PfamPF002491.8E-1484127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2286132IPR009057Homeodomain-like
CDDcd001671.96E-1188127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSRPRKAANQ SAGNKPMAAM EEDDSSTELR RGPWTLEEDN LLMSYIACHG EGRWNLLARC  60
SGLKRTGKSC RLRWLNYLKP DIKRGNLSAE EQLLILELHG KWGNRWSRIA QHLPGRTDNE  120
IKNYWRTRVQ KQARQLNVDA NSPVFRDAVR CYWMPRLLDS QYMAAFQAQA QAQDQAAQTP  180
PESGTTMQMQ EQMHCCSYPV ENHSPSTATA STSGGGGGEM AATQRQQQQQ QAAVLPVPCF  240
SELNWDLDDD PAAAMLQGSS CLGLDGLDLG PAQAHEADST ATLLDYLNCS SFNYNHMNYY  300
YCGGTAMDDI GGADHLLHGS TARKLGEWGS GGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25281324107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G397400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406151e-121BT040615.1 Zea mays full-length cDNA clone ZM_BFc0104E17 mRNA, complete cds.
GenBankHQ8586811e-121HQ858681.1 Zea mays clone UT1137 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754278.11e-166transcription factor JAMYB
SwissprotQ9C9G71e-75MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0Q3QM171e-165A0A0Q3QM17_BRADI; Uncharacterized protein
STRINGBRADI2G01960.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-75myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]