PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G323400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 532aa    MW: 56823.1 Da    PI: 5.9693
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G323400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.63.8e-25223278156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk.gLtlehvkSHLQkYRla 56 
                         k +++WtpeLH+rFv+aveqL G++kA+P++ilelm+ + +Lt+++++SHLQkYR++
  Brast01G323400.1.p 223 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGNEySLTRHNIASHLQKYRSH 278
                         5689*****************.**************87658**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.796220280IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-24221281IPR009057Homeodomain-like
SuperFamilySSF466892.69E-16222281IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-24223278IPR006447Myb domain, plants
PfamPF002493.8E-8226276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MLEVASLRSP KADQVFGLGL SDHHHVGLGF PESGGVDAAV EDDDFLLDFI DFSTCDMPFF  60
HIDGDVLPDL EVDSADLLAL DFADSSSPDE PSLEDGGRWG TGEDEAVTKA MEAGAEAELL  120
GDSMDMELPR DENHKDEDAH EKLLLEDEKD VKKKKHDSSS SVVVVGDEVS SAVTSTDQDS  180
AAAVASSDSK SSSASAEGQS KRTSSTKTQS AAVAGKSSHG RRKVKVDWTP ELHRRFVQAV  240
EQLGIDKAVP SRILELMGNE YSLTRHNIAS HLQKYRSHRK HLMAREAEAA SWTQKRQMYA  300
AAAGGVAPRK ADAAAGPWAV PTIGFPPPGT MPPPPPTAHH PGQPPPFCRP LHVWGHPSAG  360
AGVDAPPPPP PHPHMLPIWP RHLAPPPAWA HQPPVDPTYW HQQYNAPRKW GPQAVTQGTP  420
CGPPPMPPPA MIMQRFAAPP VPGMMPHPMY RPIPSPVVPS PAPPSNKLAG LPLQLDAHPS  480
KESIDAAIGD VLVKPWLPLP LGLKPPSLDS VMTELHKQGI PKVPPASATT G*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G323400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565554.10.0probable transcription factor GLK2 isoform X1
SwissprotQ5NAN51e-125GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0Q3FVQ90.0A0A0Q3FVQ9_BRADI; Uncharacterized protein
STRINGBRADI2G08287.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-56GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]