PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G319700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 281aa    MW: 29866.6 Da    PI: 8.4739
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G319700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK73.52.6e-233885451
              RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51
                        ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rki s
  Brast01G319700.1.p 38 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRTHGIVRWPYRKIVS 85
                        6899*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.72222105IPR003035RWP-RK domain
PfamPF020422.3E-213984IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAADAQAQQQ QLPLEQQAAA AQAPAAPAPA QPKPTRVSLS YEEISKLFSL PIAEAASILG  60
VCTSVLKRIC RTHGIVRWPY RKIVSGKTGD DLKNAEREKA RELLELSKIA KQKATSPGSL  120
QGVPKSQQGS TKAGLGLAQV SQAKDIPTYM DDFKNGFPSC GLSSESMKWW GASSHTETAS  180
AKGDSQEAPE SINEASKGMT DDELDWGADE AEADTDGVVT SEPSAQLCSL RRKAAGDGRR  240
LLNGDAGRGQ GFCRLNKRQK IALAQVFGAS LPEQWRSKLA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G319700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709803e-92AK370980.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230688.11e-175uncharacterized protein LOC104582530
TrEMBLA0A0Q3ICD51e-173A0A0Q3ICD5_BRADI; Uncharacterized protein
STRINGBRADI2G08600.11e-175(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.12e-10RWP-RK domain-containing protein