PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G229200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 628aa    MW: 71794.1 Da    PI: 10.0133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G229200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09429469346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +WT+eE e++ + v++ G++ W t a+++g  +++ ++k+ w+ 
  Brast01G229200.1.p 429 KWTPEEYEKIRRFVEENGTD-WQTLAKELG--KSRIHVKDAWRR 469
                         8*******************.********8..8******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-5350409IPR009057Homeodomain-like
SMARTSM007172.9353424IPR001005SANT/Myb domain
PROSITE profilePS500904.786356422IPR017877Myb-like domain
PROSITE profilePS512949.362424475IPR017930Myb domain
SMARTSM007177.3E-4426473IPR001005SANT/Myb domain
SuperFamilySSF466898.28E-9428488IPR009057Homeodomain-like
CDDcd001670.00684429471No hitNo description
Gene3DG3DSA:1.10.10.604.1E-10429481IPR009057Homeodomain-like
PfamPF139211.1E-10430486No hitNo description
PROSITE profilePS500907.782472541IPR017877Myb-like domain
SMARTSM007170.0033476543IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-8482542IPR009057Homeodomain-like
SuperFamilySSF466896.27E-6521598IPR009057Homeodomain-like
PROSITE profilePS500907.364543596IPR017877Myb-like domain
SMARTSM0071713547598IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MGAEHVEREN RHLKKKRKHP EGKAKDKSKR RRDQEAAEIE SAADMPGNGE EAVIGIVEEE  60
GHKSKKQKHR SKGEKNKVNG KEQAEKSGLM AVKHCSEHAE GDTSKDNVKK DKRKNKEDKG  120
RRAETTGQKQ TLDTTAVKEA SENSDSRVVN DTTKDNVKKD KKKKEEKKKK EAGTTMQKQI  180
FDSAVANLGS DHAKRDKVEG KLSSNSKLKK SKQKRKDGEP ALDISACDQI VTRENKRKKE  240
HSVVLEQSSQ NDNTNKGENR EIKKRKNESD KASPGLSPNG SAGGEEADVD GKNGKQKRKS  300
KEVVGREKKE KENAARSKNK GKRVSFADSM EVFSIEGGDD EDGGRSSEPK LVHGKRFTLE  360
EDTILMEAMK NYAEMKQLGE KGLEMFCNSS KHPELKGCWS DIAKSLPHRP IVATYRRANV  420
LLCRSAERKW TPEEYEKIRR FVEENGTDWQ TLAKELGKSR IHVKDAWRRI KPTNLTKGKW  480
TQEETQILFD LVNIDLRLKA RQEKRTDDHR LLKDNISWEA ISDKLTTRSH KFCCRKWYQS  540
LASPLVQQGI WADIDDYLLV EALQKIDAVC IEDVDWDCLL DHRSGEVCRR RWNQMVRMLG  600
GHREKPFIEQ VEVLSKRYCP EMIEYRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11531KRKHPEGKAKDKSKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G229200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227387.10.0RNA polymerase I termination factor
TrEMBLI1GWF20.0I1GWF2_BRADI; Uncharacterized protein
STRINGBRADI1G33410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.17e-99MYB_related family protein