PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G225100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 294aa    MW: 30972.6 Da    PI: 8.2914
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G225100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding408.9e-13122166347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +W++eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qk+
  Brast01G225100.1.p 122 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTSRTPTQVASHAQKF 166
                         8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.034115171IPR017930Myb domain
SuperFamilySSF466898.97E-17116172IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-17118170IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.0E-10119162IPR009057Homeodomain-like
SMARTSM007171.5E-9119169IPR001005SANT/Myb domain
PfamPF002496.4E-10122165IPR001005SANT/Myb domain
CDDcd001674.90E-9122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCTS SSSSGAGGQR EIMLCEGGGS GLRLFGVQVH VAAAGAGASM  60
RKSYSMDCLQ LAAAPSSLVS PSSSSSSSVL LSIDEGLERA SNGYLSDGPH GRLVQERKKG  120
VPWSEEEHRL FLVGLEKLGK GDWRGISRSY VTSRTPTQVA SHAQKFFLRQ SSMGKKKRRS  180
SLFDMVPICE NGVRASEQPA LINNSDGAST SLPRYRRPAS DMAAFDLNST EEDDDMADVS  240
LSSASAGASP RAPLIPAAAL TMEQPPNGHG GHQYCSRLDL DLGMSLSTPS IGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G225100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519231e-171JF951923.1 Aegilops speltoides clone TaMYB40 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569313.11e-169transcription factor MYBS3
SwissprotQ7XC575e-48MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLI1HP681e-167I1HP68_BRADI; Uncharacterized protein
STRINGBRADI2G42870.11e-168(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-46MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]