PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G224400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 148aa MW: 16540 Da PI: 11.4498 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.7e-13 | 11 | 54 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd +l ++ ++ ++W+++ar m+ gR+ k c++rw+ + Brast01G224400.1.p 11 GWTAEEDARLEKLARENRFRHWHRVARQMP-GRSHKLCRDRWRGH 54 6*****************************.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.274 | 5 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-13 | 7 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-8 | 8 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 1.2E-11 | 12 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-16 | 12 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.96E-10 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MLIVRLRLRR GWTAEEDARL EKLARENRFR HWHRVARQMP GRSHKLCRDR WRGHLARDVY 60 GRAFTAADDA ELARHARTSR DLKRRWRELL RKNGADHKMA EASASSTLEC PLADALAAGL 120 SSCSLGGGPA VDPRLGSLAL GFACMAV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G224400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314259.1 | 5e-79 | transcription factor MYB73-like | ||||
TrEMBL | A0A0Q3J7Z2 | 1e-77 | A0A0Q3J7Z2_BRADI; Uncharacterized protein | ||||
STRING | LPERR07G10060.1 | 1e-43 | (Leersia perrieri) | ||||
STRING | LPERR07G10290.1 | 1e-43 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 5e-13 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G224400.1.p |