PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G219400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 290aa    MW: 31156.2 Da    PI: 4.4884
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G219400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.41.2e-0734601642
                 TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                         YC Cf+ag +C++eC+C++C+N++e+
  Brast01G219400.1.p 34 SYCHCFEAGWYCTDECSCHGCRNTSEN 60
                        5**********************9875 PP
2TCR47.43.8e-15109147240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         + kgCnC+ks C+k+YCeCf+ ++ Cs +C+C +C Nk 
  Brast01G219400.1.p 109 HVKGCNCRKSACKKLYCECFKLHVGCSARCHCVGCANKF 147
                         789**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163425.6994148IPR005172CRC domain
SMARTSM011140.019760IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.6E-53457IPR005172CRC domain
SMARTSM011141.4E-12108149IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.4E-11111146IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDDDPLQCTC EKTACLQRCL ELTITTESLG DGCSYCHCFE AGWYCTDECS CHGCRNTSEN  60
QAEVEEHTDN IRRRKPDAFK PKIAASSGID VDMAAQAPGS SGVPPARTHV KGCNCRKSAC  120
KKLYCECFKL HVGCSARCHC VGCANKFGAK AASEGTDNDS PNGTSGGSGG TTTGSNDGAS  180
SIPGDEMYYL PTEPPSVVDD FFATTPDLDL YWSFNLCPIQ ADGDNGFDMF LDHGDCPQQN  240
VDPQTHEGFM QADESLHKST NSVLQQDPAN PDIRNVNENG SQINKFGRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G219400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313974.11e-109protein tesmin/TSO1-like CXC 2
TrEMBLI1HPC31e-142I1HPC3_BRADI; Uncharacterized protein
STRINGBRADI2G43340.11e-143(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.12e-28Tesmin/TSO1-like CXC domain-containing protein