PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G219100.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LSD

Protein Properties

Length: 1040aa MW: 108562 Da PI: 4.1222

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G219100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	27	7.3e-09	948	972	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lL+YPrGA +V+Ca C t+ Brast01G219100.2.p 948 CGCCRELLAYPRGAVHVQCAGCLTI 972 9*********************986 PP
2	zf-LSD1	40.4	5e-13	986	1010	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C tlL+YP+GAp+V+C+lC +V Brast01G219100.2.p 986 CGRCETLLMYPFGAPAVKCSLCLFV 1010 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.0E-12	945	975	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.6E-8	948	972	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.1E-8	984	1011	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.9E-11	986	1010	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence Send to blast
MASSPGTGPP PESSRSSSPT PFPPTPPPQE SPQPTTADPL EPAQSDHAKP TAQPHPGKAT 60 ATSPEAYESP APMDGSTRDA GRPPLLSPQE GTPASPALEA AKPEEPSPVS PPPMVEVLPE 120 AAATAASRSP SPQIAAASTA DGPPPSTTPS PPASTGASWD ASLADSAAMA SEEVARLPAA 180 LEPIDEVADP LTAQAPATKS RAERLLPQQH VRPISSMSLI GCENFEPGLL PTPLAEITHA 240 LSDAARTDEI DVAEQAAGTS PAVAATDEKT DSALAGQLIF ERDGEGSFEL PVLTPRSPQM 300 EGELCSLEMA PPGFESFKSS WTPLLPPTLP AETTHSLQNA AATEAVAVPE EAARSLPILE 360 TLDTMTDTKP GLPSPESLAE GPLQQPLLRP PSPITQAEPC SPDTPPPGFE NFKLSWLPPP 420 NETTYASSVV VATKAVAVTL EEAVLPVPTL EAMDVVTDTP CSLLPPFEND PLLRPTTPTA 480 QSTPCSPQAP PGFENSESSW PPLSTALSGT AYISPDETAT EPLAVTFEEA TGPTPTIEAI 540 DVKIHAKHPL LVPLESAVEG SLKEPQQKPP SPTMQDAPCS PQAPPGFENS ESSWPPLSTA 600 LSGTAYLSPD ETATEPLAVT FEEATGPTPA IEAIDVNIRA KHPLLVPLES GVEGSLQEPE 660 QKPSSPAMQD APGSPDMAPP GFENFKSSQL LQHSPPLTQS AYTLHDQATI EAVHMSEETA 720 QTLPALEGMG VNMDTSSENG AGSFQQQTPR LPCPMEKGTA CSPEIVPSGH ENLESLQLSP 780 LPVLPQVQTP DALVDVVAIE AVVGSLKEVH HPPPVLLKIE EGTAPIRPPP LESGSEGSLP 840 QLEPHVHSVS TLAVDTLTGA PATMSVAVES EERAPPQLAL HAVDTNMECA TTLLTLSKKE 900 TEDSLPQLQH PPCSQTVQAA PCSLEALELL PPPPPPPFLN KEMGQMVCGC CRELLAYPRG 960 AVHVQCAGCL TINLVLEAHE VGKVHCGRCE TLLMYPFGAP AVKCSLCLFV TEIGERKVRP 1020 RISVEHVVPP HPPELANQS*

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence Send to blast

MASSPGTGPP PESSRSSSPT PFPPTPPPQE SPQPTTADPL EPAQSDHAKP TAQPHPGKAT  60
ATSPEAYESP APMDGSTRDA GRPPLLSPQE GTPASPALEA AKPEEPSPVS PPPMVEVLPE  120
AAATAASRSP SPQIAAASTA DGPPPSTTPS PPASTGASWD ASLADSAAMA SEEVARLPAA  180
LEPIDEVADP LTAQAPATKS RAERLLPQQH VRPISSMSLI GCENFEPGLL PTPLAEITHA  240
LSDAARTDEI DVAEQAAGTS PAVAATDEKT DSALAGQLIF ERDGEGSFEL PVLTPRSPQM  300
EGELCSLEMA PPGFESFKSS WTPLLPPTLP AETTHSLQNA AATEAVAVPE EAARSLPILE  360
TLDTMTDTKP GLPSPESLAE GPLQQPLLRP PSPITQAEPC SPDTPPPGFE NFKLSWLPPP  420
NETTYASSVV VATKAVAVTL EEAVLPVPTL EAMDVVTDTP CSLLPPFEND PLLRPTTPTA  480
QSTPCSPQAP PGFENSESSW PPLSTALSGT AYISPDETAT EPLAVTFEEA TGPTPTIEAI  540
DVKIHAKHPL LVPLESAVEG SLKEPQQKPP SPTMQDAPCS PQAPPGFENS ESSWPPLSTA  600
LSGTAYLSPD ETATEPLAVT FEEATGPTPA IEAIDVNIRA KHPLLVPLES GVEGSLQEPE  660
QKPSSPAMQD APGSPDMAPP GFENFKSSQL LQHSPPLTQS AYTLHDQATI EAVHMSEETA  720
QTLPALEGMG VNMDTSSENG AGSFQQQTPR LPCPMEKGTA CSPEIVPSGH ENLESLQLSP  780
LPVLPQVQTP DALVDVVAIE AVVGSLKEVH HPPPVLLKIE EGTAPIRPPP LESGSEGSLP  840
QLEPHVHSVS TLAVDTLTGA PATMSVAVES EERAPPQLAL HAVDTNMECA TTLLTLSKKE  900
TEDSLPQLQH PPCSQTVQAA PCSLEALELL PPPPPPPFLN KEMGQMVCGC CRELLAYPRG  960
AVHVQCAGCL TINLVLEAHE VGKVHCGRCE TLLMYPFGAP AVKCSLCLFV TEIGERKVRP  1020
RISVEHVVPP HPPELANQS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G219100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232018.1	0.0	proline-rich protein 36
Refseq	XP_010232019.1	0.0	proline-rich protein 36
Refseq	XP_014755141.1	0.0	proline-rich protein 36
Refseq	XP_014755142.1	0.0	proline-rich protein 36
TrEMBL	A0A0Q3IS86	0.0	A0A0Q3IS86_BRADI; Uncharacterized protein
STRING	TRIUR3_35201-P1	0.0	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-29	lsd one like 2

Link Out ? help Back to Top
Phytozome	Brast01G219100.2.p