PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G190200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 370aa    MW: 40075.5 Da    PI: 5.1993
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G190200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.65.1e-19131408126
                 NAM   8 hPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgk 88 
                         +P+d+el++ +L +++++      +   +++e+d+y+++P dL +      ++++++ wyfFs  + k   g r+ r     +g W++   
  Brast01G190200.1.p  13 QPSDQELISSFLVERASSGAgseKNSRGFVHEADVYSAHPADLTRrygaaLASNGDEAWYFFSAVRAKG--GGRRARtvDSGDGCWHSEAG 101
                         7************9998887554444457**************854666544458889*****998875..45555613455899**9999 PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                         +k+v+s+  g lvg ++ + f ++++   +++ W+m e 
  Brast01G190200.1.p 102 SKPVVSAhLGGLVGHRQNFSFVTKEDGVRVRSGWLMVEL 140
                         999999766788**********99999999******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.8956158IPR003441NAC domain
PfamPF023655.2E-1113140IPR003441NAC domain
SuperFamilySSF1019411.44E-2813158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MPQRRNAFAL DAQPSDQELI SSFLVERASS GAGSEKNSRG FVHEADVYSA HPADLTRRYG  60
AALASNGDEA WYFFSAVRAK GGGRRARTVD SGDGCWHSEA GSKPVVSAHL GGLVGHRQNF  120
SFVTKEDGVR VRSGWLMVEL GLHGDGQDEV TLCKVYFSPR AAAKNQHRKP ASSSSPSATR  180
KRKAAAPADA RPPAGQRRRH ATPEAEAAAA SSGSEMVVDD DPVPVVEPPG EDPVVEADAP  240
VGVVGGLARF LASLRQREGI ISVEQDFDRR PPENVGQGPP PLPSRLFTDE LPSSFTELLL  300
HGPDEDEDEW PMVVDSSSAD VVRRNRAEEP VIMFLTFDEM YALPQVKEFF AWEKQQLEEM  360
RTSVKLGSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G190200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193093.17e-89NAC domain-containing protein 92-like
TrEMBLA0A0Q3GF841e-149A0A0Q3GF84_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G46020.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.24e-09NAC domain containing protein 38