PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G188300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 706aa    MW: 77674.3 Da    PI: 7.1135
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G188300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-24138238198
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   
  Brast01G188300.1.p 138 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySLQRP-SQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL-- 225
                         99****************************9966654.569************************************************.. PP

                         SSSEE..EEEEE- CS
                  B3  86 grsefelvvkvfr 98 
                         + +++el+++v+r
  Brast01G188300.1.p 226 RGEDGELRLGVRR 238
                         4499999***998 PP
2Auxin_resp100.91.7e-33264344182
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                         +aha++ ks+F ++YnPr ++seF+++++k+++++ +++svGmRfkm++e+ed+serr +G+++g +++dp + ++SkW++L
  Brast01G188300.1.p 264 VAHALAVKSTFYIYYNPRLCQSEFIIPYWKFMRSVGQPLSVGMRFKMRYENEDASERRSTGIIIGSRESDP-KSHGSKWKCL 344
                         699********************************************************************.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-42133244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-39134241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-23136238No hitNo description
PfamPF023623.1E-22138238IPR003340B3 DNA binding domain
SMARTSM010197.1E-23138240IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281138240IPR003340B3 DNA binding domain
PfamPF065078.9E-27264344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MMGIDLNTVE EDEEEGGTAA EPARGAVCLE LWHACAGPVG PLPRKGSAVV YLPQGHLEHI  60
GDAGSAAAKV PPHVFCRVVD VKLQADAATD EVYAQVTLLV DNEESKRRVR DGENEEARDG  120
DGEDADAMKR LPRMPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS LQRPSQELVA  180
KDLHGTEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGVRRVA  240
QLKNVSPFPA PHNQDPGHSS LGNVAHALAV KSTFYIYYNP RLCQSEFIIP YWKFMRSVGQ  300
PLSVGMRFKM RYENEDASER RSTGIIIGSR ESDPKSHGSK WKCLVVRWDD DIECRRPNRL  360
SPWEIELTGS VSGSHLSTHH SKRLKPCLPQ VNPDMLLPSG SVSSDFAESA RFHKVLQGQE  420
LLGFKTHDGT VSASSQASEA RNFQYTDERS CSINMSNIAG VPRLGAGTPP GNHGFSYHCS  480
GFGESQRFQK VLQGQEVFRP YRGGTLSDAD ISGSGFCQPA GNYASGATYK WLTPQGCDYR  540
GSTTPAMQQA SSPSSVLMFP QTSSKTPSFE CLYRSLDKDE SIRFNPPQGM GRTNRTLPLW  600
PHLVSGKVID ECTESEKLQT PDMGPEHEPN DNDVHTNVCK IFGISLTQKV QAGDEVDCGN  660
ANYHSRPLSS KPQVLKSLRS SCATVREQRP AVGIVVDVSA VDMMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1082637418361Auxin response factor 1
4ldy_B1e-1082637418361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G188300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569536.10.0auxin response factor 2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLI1HQ900.0I1HQ90_BRADI; Auxin response factor
STRINGBRADI2G46190.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-160ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]