PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G146300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HSF | ||||||||
Protein Properties | Length: 439aa MW: 48804 Da PI: 5.4645 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109 | 3.5e-34 | 13 | 103 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+ye++++++++ ++sw+ +g+sfvv + +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+ weF++++F +g+++ Brast01G146300.1.p 13 FLTKTYEMVDEPATDAVVSWTPSGTSFVVASQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFIRGQRH 94 9***************************************************************9998.........************** PP XXXXXXXXX CS HSF_DNA-bind 93 llekikrkk 101 l++i+r+k Brast01G146300.1.p 95 RLKNIHRRK 103 *******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.0E-60 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.13E-33 | 9 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.6E-37 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 8.9E-21 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-30 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.9E-21 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.9E-21 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MDAGGGAASL PPFLTKTYEM VDEPATDAVV SWTPSGTSFV VASQADFCRD LLPKYFKHNN 60 FSSFVRQLNT YGFRKVDPEQ WEFANEEFIR GQRHRLKNIH RRKPIFSHSS HPQGAGPLVD 120 SERRDYEEEI ERLKCDNAAL NLELEKNAEK KIDMEKRMQA LEDKLFAVED QQTNLICYVR 180 DIVKEPGFLS SFVQQSDHSR KKRRLPKPIS FHEDASAQGN QIMHRDLTNS PAHELSRESF 240 DKMESSLNSL ENFLREATQA FGNGISYDCD VPGPSAVVLT ELHLSGESDP HAPSPPSMMH 300 TSSAGVGDSH SSRGIAESTS CPESPPLPQT HSRADSRAKV SEIDVNLEPA VTETGPSRDQ 360 PGQDPPAVAA AGANDGFWQQ FLTEQPGSSV AHQEAQSERR DREADQVKTG DRANCWWGKK 420 NIEQMTEKLG HLTSAEKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-28 | 6 | 102 | 22 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-28 | 6 | 102 | 22 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-28 | 6 | 102 | 22 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G146300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569811.1 | 0.0 | heat stress transcription factor A-4b | ||||
Swissprot | Q94J16 | 0.0 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | I1HRK2 | 0.0 | I1HRK2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G49860.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 2e-85 | heat shock transcription factor A4A |
Link Out ? help Back to Top | |
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Phytozome | Brast01G146300.1.p |
Publications ? help Back to Top | |||
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