PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G143400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 655aa    MW: 71072.3 Da    PI: 7.5108
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.4e-25132233199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F  
  Brast01G143400.1.p 132 FCKTLTASDTSTHGGFSVPRRAAEDCfspldyqQ-IR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL- 219
                         99****************************9843.43.4569************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++el+++v+r+
  Brast01G143400.1.p 220 -RGDDGELKLGVRRA 233
                         .3489999***9996 PP
2Auxin_resp111.48.8e-37258338182
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                         +a++++++svF+++YnPr ++seF+v+++k++k+l++++++GmRfk+++ +ed++err sG+++g++++dp+rWp+S+WrsL
  Brast01G143400.1.p 258 VANSLKHRSVFHICYNPRDAASEFIVPYWKFLKSLNHPFCIGMRFKIQYGSEDVNERR-SGMITGINEVDPIRWPGSNWRSL 338
                         68999*****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-43121271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-37128233IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-22130232No hitNo description
PROSITE profilePS5086313.197132234IPR003340B3 DNA binding domain
SMARTSM010196.9E-23132234IPR003340B3 DNA binding domain
PfamPF023626.7E-23132233IPR003340B3 DNA binding domain
PfamPF065073.9E-30259338IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MGIDLNAADE NRGARGPPPS PTAVCRELWH ACAGPIVALP RRGSKVVYLP QAHLAAAGCG  60
GDVAVALPPH VSCRVVDVEL CADPSTDEVY ARLALMAEGE VFERNMGGGR NEGGEDTEDG  120
DGERKSRMLH MFCKTLTASD TSTHGGFSVP RRAAEDCFSP LDYQQIRPSQ ELVAKDLHGA  180
KWRFRHIYRG QPRRHLLTTG WSSFVNKKKL VSGDAVLFLR GDDGELKLGV RRAIQLKNES  240
LFKAFNSNSS KMHTLSAVAN SLKHRSVFHI CYNPRDAASE FIVPYWKFLK SLNHPFCIGM  300
RFKIQYGSED VNERRSGMIT GINEVDPIRW PGSNWRSLLV RWEDDTDCNS QHRLSPWEIE  360
IVGGSVSIAQ SLPASSSKRT KLCSQSNLDV PTLYGNGRPD SVGTDMLPRV LQGQELMGSG  420
THLVTYSPQQ AGVTEFKCSD DMRFITNTRS CMLSGPTSRL PARNSGFSYQ SVGFGESVGF  480
PEVLQGQEIS QTVPLFQGLV SDTCSAKGRY GLHNMHTSYA VSGGLSSAIQ GHSLSTTQPE  540
MASPLLTVVP QLGPSSKNKD GYANGSQPEP FGVVKDSTPG DAVKIGPDGR KVARSSCMLF  600
GFSLTEKILP TEEDCVKEGN HETDCPNPRM LDLFGYGHAT PGALHALCAA PLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-982336018353Auxin response factor 1
4ldy_B3e-982336018353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3548060.0AK354806.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315553.10.0auxin response factor 3
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLI1HRN40.0I1HRN4_BRADI; Auxin response factor
STRINGBRADI2G50120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-149ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]