PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G105500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 287aa    MW: 31854.9 Da    PI: 6.401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G105500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.25e-2168128359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                         Dg+ WrKYGqK++k++ fpr YYrC+++   +C + k v++++ +dp ++++tY+ eH ++
  Brast01G105500.1.p  68 DGHLWRKYGQKNIKDTAFPRLYYRCSYRedkQCLASKLVQQENcDDPPLFKVTYTYEHSCN 128
                         9**************************99999*******98754799***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-2155128IPR003657WRKY domain
SuperFamilySSF1182901.14E-2059129IPR003657WRKY domain
SMARTSM007749.4E-3166129IPR003657WRKY domain
PROSITE profilePS5081116.03168130IPR003657WRKY domain
PfamPF031064.2E-2268127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASPRPKRES FDFEDPRAQE GMGSASASYS PPGGVFGLSP PDSSPRDSRK RRKDRPSWVK  60
HTFTPHFDGH LWRKYGQKNI KDTAFPRLYY RCSYREDKQC LASKLVQQEN CDDPPLFKVT  120
YTYEHSCNTA PVPTPDVVAE LPPPPAAGDS SPLFLRFDSS GAGHSHSHSH GDTHRTTNME  180
LEQPRHYQQS LPAPAWPSMM LSFDSNNIQQ HHDQHPAFLS AELPPAAAAS TSSLFSTDPL  240
PAPSTTTDGG DRFSTWDSLR YGLNDHVHFG DHVYLPDTGN AGDDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-13681271068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853RKRRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G105500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564497.11e-155probable WRKY transcription factor 38
TrEMBLI1HSV91e-153I1HSV9_BRADI; Uncharacterized protein
STRINGBRADI2G53495.11e-154(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-16WRKY DNA-binding protein 46