PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G105200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 314aa    MW: 33712.5 Da    PI: 5.8876
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G105200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.85.2e-19107172259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 
                         +Dgy WrKYGqK + +++fpr YYrC+++   gCp++k+v+ + +      pk+  ++Y  eH+++
  Brast01G105200.1.p 107 SDGYLWRKYGQKRIMKTRFPRCYYRCSHHrerGCPATKQVQEQPQqhgddHPKTYLVIYVHEHTCR 172
                         7***************************99999*******9875422221589999*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-2297174IPR003657WRKY domain
SuperFamilySSF1182909.81E-20100174IPR003657WRKY domain
PROSITE profilePS5081117.086101174IPR003657WRKY domain
SMARTSM007749.7E-26106173IPR003657WRKY domain
PfamPF031065.4E-21108172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQAQSRLGSA AADEQHYEAV VRELRRGREL TARLQAEATR ALRGQGQAEA TAAFILREVS  60
RAFTVCISIM GGAAPAPATP TPLAGAARRP RDDGATRKMT VTTSPNSDGY LWRKYGQKRI  120
MKTRFPRCYY RCSHHRERGC PATKQVQEQP QQHGDDHPKT YLVIYVHEHT CRAPPSAEPA  180
EALGGRFVRD DDVAAPAAAL DGRGAQEELE RQVLVSSLAC VLQGRHTADS TTTTTWGGKP  240
AAAGGSPSSS SRQQLGRISG DDAGALEMPP LTSSSLGAEE EEEEEEELDV MDYDVPGDDA  300
ALCFGGPSTY GML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141081721069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G105200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753928.11e-132WRKY transcription factor SUSIBA2
TrEMBLA0A0Q3GH301e-130A0A0Q3GH30_BRADI; Uncharacterized protein
STRINGBRADI2G53510.13e-87(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-18WRKY DNA-binding protein 55