PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G105100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 289aa    MW: 29769.2 Da    PI: 6.5108
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G105100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.27.8e-24119177258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnh 58 
                         dDg++WrKYGqK+++g ++pr YYrC+++  gC ++++v+rs+++p +  i Y geH++
  Brast01G105100.1.p 119 DDGFAWRKYGQKDINGCKHPRLYYRCAYRgeGCVATRRVQRSRDEPAAYAIAYYGEHTC 177
                         8***************************9999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-25112178IPR003657WRKY domain
PROSITE profilePS5081121.207113175IPR003657WRKY domain
SuperFamilySSF1182901.7E-23113179IPR003657WRKY domain
SMARTSM007742.4E-31118179IPR003657WRKY domain
PfamPF031061.5E-23119177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MALATPNAVV LELMTMGQQS AAHLGELLLA ASPATLPGEQ LQNQALAAEI LRCCDRVIAA  60
MSRRHPGAAD ADAAAAANKK RKATDVPGFA SAAGAPLPSR RARGGAEARG EVVESGTTDD  120
GFAWRKYGQK DINGCKHPRL YYRCAYRGEG CVATRRVQRS RDEPAAYAIA YYGEHTCGQG  180
DGASAFQQRA AGTAASLLPA PAVVVGFGSN ASGAGDVDRD RGSALPLDPA GSGASRRGWS  240
SSPSSSSSEV ELGASPSPVM EFLEGSFDWE SVVNSLGFGD LPLVAMLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20119177968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G105100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567230.11e-145probable WRKY transcription factor 70
TrEMBLI1HSW21e-144I1HSW2_BRADI; Uncharacterized protein
STRINGBRADI2G53520.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-20WRKY family protein