PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G094500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 21453.8 Da PI: 6.4162 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H Brast01G094500.1.p 60 FECKTCSKRFPSFQALGGHRTSH 82 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00072 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H Brast01G094500.1.p 112 HECAVCGLEFSMGQALGGHMRRH 134 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.01E-6 | 57 | 84 | No hit | No description |
Pfam | PF13912 | 4.5E-12 | 59 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.63E-6 | 110 | 139 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.7E-4 | 110 | 137 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.4E-11 | 111 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.89 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MTLTREEAQE SKEMDQSLRV HADALLSLSS PAAGEITTSH KPPTTTTPAG RRALAAEGVF 60 ECKTCSKRFP SFQALGGHRT SHTRLQARIL LQQQQQHDQD QEQQERDRAR VHECAVCGLE 120 FSMGQALGGH MRRHRGEPAM ATTTAAPASG ETQQQPDVVM PDLNYPPMME DSGGGGRQDS 180 SASDRRSEHP LLDLLV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G094500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-88 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567258.1 | 7e-92 | zinc finger protein ZAT11 | ||||
TrEMBL | I1HT80 | 2e-90 | I1HT80_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G54500.1 | 3e-91 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 2e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G094500.1.p |