PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G064700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 20139.7 Da PI: 8.7051 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.8e-16 | 66 | 114 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr+++ +g+Wv+eIr+p g r r +lg++ t++ Aa a++aa l+g Brast01G064700.1.p 66 YKGVRRRR-WGKWVSEIRVP---GSRERLWLGSYATPQAAAVAHDAAVFFLRG 114 9****777.**********8...435***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.57E-15 | 65 | 126 | No hit | No description |
SMART | SM00380 | 1.1E-25 | 65 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-25 | 65 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.468 | 65 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-9 | 66 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-8 | 66 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 66 | 125 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.2E-8 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MQVNSSCVVD LPHPIYTRRT EVTGSELSSV AVVRTLFAMS RADEAAAARG AGKGEGEEEE 60 GCRYNYKGVR RRRWGKWVSE IRVPGSRERL WLGSYATPQA AAVAHDAAVF FLRGAGPDAA 120 ALNFPERAAA AYGAVGAARL SPRSVQRVAS DAGMAADAQL VEAREQQQRR LASSGEISVS 180 VDGMEILM* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G064700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727676 | 2e-95 | KJ727676.1 Zea mays clone pUT5603 AP2-EREBP transcription factor (EREB63) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567341.1 | 2e-59 | ethylene-responsive transcription factor ERF096 | ||||
TrEMBL | A0A0Q3KIG9 | 4e-58 | A0A0Q3KIG9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G57200.1 | 3e-54 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 6e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G064700.1.p |