PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G054900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 529aa    MW: 57110.7 Da    PI: 6.3788
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G054900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.72.9e-1081565271374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsP 89 
                         lv+lL++cAeav+ +d ++a +lL +l+  a  +g+++qR+a++f+++La rla   +        +    ++++ + +  al + +ev+P
  Brast01G054900.1.p 156 LVQLLVACAEAVACRDRAQAASLLRELQAGAPVHGTAFQRVASCFVQGLADRLALAHPPALGPAsmAFCIPQSSSCAGRGEALAVAYEVCP 246
                         689**************************************************99666554333114444444568888999999****** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175
                         +l+f+h++aN  Ilea+ege++vH++D++++ Gl    QW aLl+ La+R +  p ++R+Tgvg+    ++++++++g+ L+ +Aeelg+ 
  Brast01G054900.1.p 247 YLRFAHFVANASILEAFEGESKVHVVDLGMTLGLdrahQWRALLDGLAARGGARPaRVRVTGVGA----RADAMRAVGRELEAYAEELGMC 333
                         *****************************999866666*************66655*********....99******************** PP

                GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                         +ef++ v ++le+l++++L ++ gEa+a+n+vl+lh +++es    +   +vL+++++l P+ +v+veq+a hn++ Fl rf+eal+yy+a
  Brast01G054900.1.p 334 VEFRA-VDRTLESLHVDDLGIEAGEAVAINSVLELHCVVKESRGALN---SVLQTIRKLAPRAFVLVEQDAGHNGPFFLGRFMEALHYYAA 420
                         *****.799******************************88877777...8**************************************** PP

                GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                         lfd+l+a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF+++p++   a++a+  l++ + + gy+v ee+g
  Brast01G054900.1.p 421 LFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSMPIKM--AAKAREWLEENAgGSGYTVAEEKG 509
                         ***************************************************************75..4567777777777*********** PP

                GRAS 357 slvlgWkdrpLvsvSaWr 374
                         +lvlgWk++p++++S+W+
  Brast01G054900.1.p 510 CLVLGWKGKPVIAASCWK 527
                         *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.618130508IPR005202Transcription factor GRAS
PfamPF035149.9E-106156527IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MGMSPGPFAT SYCLTHEDAS ICTETQELDY HHPYYYGIEE VSLDDVELEL AASSRAHKAT  60
KVDYHSSPYH ISWPPPPHAA ADVESSRVRK KQFRDVLESC KRKVEAMEAM EQHSPPLAGG  120
GGFQEDQQGD QGVQVSVGGE GSSSSSSGGG TDGMRLVQLL VACAEAVACR DRAQAASLLR  180
ELQAGAPVHG TAFQRVASCF VQGLADRLAL AHPPALGPAS MAFCIPQSSS CAGRGEALAV  240
AYEVCPYLRF AHFVANASIL EAFEGESKVH VVDLGMTLGL DRAHQWRALL DGLAARGGAR  300
PARVRVTGVG ARADAMRAVG RELEAYAEEL GMCVEFRAVD RTLESLHVDD LGIEAGEAVA  360
INSVLELHCV VKESRGALNS VLQTIRKLAP RAFVLVEQDA GHNGPFFLGR FMEALHYYAA  420
LFDALDAALP RYDARRARVE QFHFGAEIRN VVGCEGAARV ERHERADQWR RRMSRAGFQS  480
MPIKMAAKAR EWLEENAGGS GYTVAEEKGC LVLGWKGKPV IAASCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5816352626378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G054900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564863.10.0DELLA protein RGL1
TrEMBLI1HUB70.0I1HUB7_BRADI; Uncharacterized protein
STRINGBRADI2G57940.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-56RGA-like 1