PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G050200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 349aa    MW: 37938.3 Da    PI: 6.8003
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G050200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.57e-20192286294
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +kvl++sdv+++gr+vlpkk ae+h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++  ++
  Brast01G050200.1.p 192 QKVLKQSDVGSLGRIVLPKKEAETHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SD 279
                         79*************************999***********7778*******99777777777777.*******************9..55 PP

                         SEE..EE CS
                  B3  88 sefelvv 94 
                          ++++++
  Brast01G050200.1.p 280 VKGRYLI 286
                         5555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-27185283IPR015300DNA-binding pseudobarrel domain
CDDcd100154.48E-36189289No hitNo description
SuperFamilySSF1019361.12E-22190285IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-18191292IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08191292IPR003340B3 DNA binding domain
PfamPF023623.0E-16192284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDASAGSPPP PHSQQNHGGG GRPGKAPVGE IRAGEASPDE FLFADDTFPS LPDFPCLSSP  60
SSSTFSSSSS AFTAATTGGE QHSAAAEDGI DALADLDQLL DFASLSVPSW EDEPLCPDDV  120
GMMLEDAMSD DHKPPARRSW MGAPSHRRPQ IRSGRITRDF FSLEARTSLS GDRDPRGANT  180
KPADKNLRFL LQKVLKQSDV GSLGRIVLPK KEAETHLPEL KTRDGISIPM EDIGTSRVWN  240
MRYRFWPNNK SRMYLLENTG DFVRSNELQE GDFIVIYSDV KGRYLIRGVK VRPVQDQAGK  300
HKHGIPGNRG GASDVKTGPE DRGCKEKSPH GAQRSRQEAT GTMMAVRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-361872901105B3 domain-containing transcription factor FUS3
6j9b_D3e-361872901105B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G050200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4167531e-124DQ416753.1 Avena fatua clone 1 viviparous 1 mRNA, partial cds.
GenBankDQ4167541e-124DQ416754.1 Avena fatua clone 2 viviparous 1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232722.11e-109B3 domain-containing protein VP1
SwissprotP373981e-72VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLI1HUG61e-110I1HUG6_BRADI; Uncharacterized protein
STRINGBRADI2G58390.11e-111(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.19e-63B3 family protein
Publications ? help Back to Top
  1. Espelund M,Bekele E,Holst-Jensen A,Jakobsen KS,Nordal I
    A molecular genetic analysis of Eragrostis tef (Zucc.) Trotter: non-coding regions of chloroplast DNA, 18S rDNA and the transcription factor VP1.
    Hereditas, 2000. 132(3): p. 193-202
    [PMID:11075514]
  2. Gampala SS,Hagenbeek D,Rock CD
    Functional interactions of lanthanum and phospholipase D with the abscisic acid signaling effectors VP1 and ABI1-1 in rice protoplasts.
    J. Biol. Chem., 2001. 276(13): p. 9855-60
    [PMID:11139577]
  3. Carrari F, et al.
    Cloning and expression of a sorghum gene with homology to maize vp1. Its potential involvement in pre-harvest sprouting resistance.
    Plant Mol. Biol., 2001. 45(6): p. 631-40
    [PMID:11430426]
  4. Hagiwara K,Rao S,Scott SW,Carner GR
    Nucleotide sequences of segments 1, 3 and 4 of the genome of Bombyx mori cypovirus 1 encoding putative capsid proteins VP1, VP3 and VP4, respectively.
    J. Gen. Virol., 2002. 83(Pt 6): p. 1477-82
    [PMID:12029163]
  5. Zhao SL,Liang CY,Hong JJ,Peng HY
    Genomic sequence analyses of segments 1 to 6 of Dendrolimus punctatus cytoplasmic polyhedrosis virus.
    Arch. Virol., 2003. 148(7): p. 1357-68
    [PMID:12827465]
  6. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  7. Suzuki N, et al.
    Molecular analysis of rice dwarf phytoreovirus segment S1: interviral homology of the putative RNA-dependent RNA polymerase between plant- and animal-infecting reoviruses.
    Virology, 1992. 190(1): p. 240-7
    [PMID:1529532]
  8. Fan J, et al.
    Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa).
    J. Exp. Bot., 2007. 58(13): p. 3811-7
    [PMID:18057047]
  9. Sugimoto K, et al.
    Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(13): p. 5792-7
    [PMID:20220098]
  10. Sharoni AM, et al.
    Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice.
    Plant Cell Physiol., 2011. 52(2): p. 344-60
    [PMID:21169347]
  11. Kumar S,Jiang S,Jami SK,Hill RD
    Cloning and characterization of barley caryopsis FCA.
    Physiol Plant, 2011. 143(1): p. 93-106
    [PMID:21645000]
  12. Cao G, et al.
    Characterization of the complete genome segments from BmCPV-SZ, a novel Bombyx mori cypovirus 1 isolate.
    Can. J. Microbiol., 2012. 58(7): p. 872-83
    [PMID:22712678]
  13. Ye H,Beighley DH,Feng J,Gu XY
    Genetic and physiological characterization of two clusters of quantitative trait Loci associated with seed dormancy and plant height in rice.
    G3 (Bethesda), 2013. 3(2): p. 323-31
    [PMID:23390608]
  14. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  15. Lata C, et al.
    Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.).
    PLoS ONE, 2014. 9(11): p. e113092
    [PMID:25409524]
  16. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]
  17. Li S, et al.
    Facilitation of rice stripe virus accumulation in the insect vector by Himetobi P virus VP1.
    Viruses, 2015. 7(3): p. 1492-504
    [PMID:25807055]
  18. Mukhopadhyay P,Tyagi AK
    OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.
    Sci Rep, 2015. 5: p. 9998
    [PMID:25925167]
  19. Du W, et al.
    Physiological characteristics and related gene expression of after-ripening on seed dormancy release in rice.
    Plant Biol (Stuttg), 2015. 17(6): p. 1156-64
    [PMID:26205956]
  20. Zhang X,Sun J,Cao X,Song X
    Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.
    Plant Physiol., 2015. 169(3): p. 2118-28
    [PMID:26351308]
  21. Duan YB, et al.
    Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.
    Plant Mol. Biol., 2016. 90(1-2): p. 49-62
    [PMID:26482477]
  22. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]
  23. Chen L, et al.
    Expansion and stress responses of AP2/EREBP superfamily in Brachypodium distachyon.
    Sci Rep, 2016. 6: p. 21623
    [PMID:26869021]
  24. Li Z, et al.
    Serine carboxypeptidase 46 Regulates Grain Filling and Seed Germination in Rice (Oryza sativa L.).
    PLoS ONE, 2016. 11(7): p. e0159737
    [PMID:27448032]
  25. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  26. Hattori T,Terada T,Hamasuna S
    Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1.
    Plant J., 1995. 7(6): p. 913-25
    [PMID:7599651]
  27. Hollung K,Espelund M,Schou K,Jakobsen KS
    Developmental, stress and ABA modulation of mRNA levels for bZip transcription factors and Vp1 in barley embryos and embryo-derived suspension cultures.
    Plant Mol. Biol., 1997. 35(5): p. 561-71
    [PMID:9349278]
  28. Schultz TF,Medina J,Hill A,Quatrano RS
    14-3-3 proteins are part of an abscisic acid-VIVIPAROUS1 (VP1) response complex in the Em promoter and interact with VP1 and EmBP1.
    Plant Cell, 1998. 10(5): p. 837-47
    [PMID:9596641]