PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G045200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 442aa    MW: 47889 Da    PI: 8.3171
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G045200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.4e-1084110127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C +++rtG C++G +C+F+H+p
  Brast01G045200.1.p  84 PGEPDCTYYLRTGLCRFGMSCRFNHPP 110
                         5789*********************97 PP
2zf-CCCH382.7e-12131155327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Brast01G045200.1.p 131 QPECQYYLKTGTCKFGPTCKFHHPR 155
                         799********************96 PP
3zf-CCCH35.22e-11179201527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C ++++tG+CkyG++CkF+H++
  Brast01G045200.1.p 179 ECAYYLKTGQCKYGNTCKFNHPE 201
                         5********************96 PP
4zf-CCCH34.63.3e-11334359227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C ++ +tG Ck+G+ CkF+H++
  Brast01G045200.1.p 334 DQPECIYYIKTGDCKFGAVCKFHHPR 359
                         689*********************96 PP
5zf-CCCH40.64.3e-13379405127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++elC+f++r+G+Ck+G +CkF H++
  Brast01G045200.1.p 379 PGEELCKFYSRYGICKFGINCKFDHPM 405
                         689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-583110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.97183111IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-885110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-588111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-489109IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694128156IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10131155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6132157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5134156IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5174201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6174201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798174202IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9179201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5180200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019332360IPR000571Zinc finger, CCCH-type
SMARTSM003560.0071332359IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7334359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5335359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6376404IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953378406IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7378405IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10380405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5382403IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDEAGRAPAP AAVTVTASSA ANASDPSPPP PPAPAANANA NANAAADTDA PSPDPGALYD  60
EGMWQQMTMS GGATMQPGPY PERPGEPDCT YYLRTGLCRF GMSCRFNHPP DRNLAIASAR  120
MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGMVQLNTLG YPLRLNEMEC  180
AYYLKTGQCK YGNTCKFNHP ELFNAVASSR GSPIYPSVHT SASAGPHSYA GTIPNWTYPR  240
GSFIPSHRWQ SPSNYAPMIV QQGLVQVPSW NSYPGQMLPV SSSESRLQSP GAQTYRQGEG  300
SSGNQGMLSP YRPSSFPVPQ YALQRENVFP ERPDQPECIY YIKTGDCKFG AVCKFHHPRV  360
RSLPPPDCVL SPMGLPLRPG EELCKFYSRY GICKFGINCK FDHPMASPMG VYAYGFSASA  420
STNAPMARRL LESPSGSAYT P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G045200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679460.0AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564925.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLI1HUK80.0I1HUK8_BRADI; Uncharacterized protein
STRINGBRADI2G58770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-144zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]