PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G002900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 267aa    MW: 30301.9 Da    PI: 8.4693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G002900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-143784148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed +lv  v+++G ++W+  a+  g++R++k+c++rw +yl
  Brast01G002900.1.p 37 KGPWTEQEDMKLVWFVRLFGERRWDFLAKVSGLNRSGKSCRLRWVNYL 84
                        79********************************************97 PP
2Myb_DNA-binding56.37.2e-1890134147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rgr++++E+ l v++++++G++ W++Iar m+ gRt++++k++w+++
  Brast01G002900.1.p  90 RGRMSPDEERLVVELHARWGNR-WSRIARSMP-GRTDNEIKNYWRTH 134
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7073284IPR017930Myb domain
SMARTSM007176.0E-133686IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2836131IPR009057Homeodomain-like
PfamPF002492.1E-133784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-193891IPR009057Homeodomain-like
CDDcd001676.95E-93984No hitNo description
PROSITE profilePS5129424.75285139IPR017930Myb domain
SMARTSM007171.1E-1589137IPR001005SANT/Myb domain
PfamPF002491.3E-1590134IPR001005SANT/Myb domain
CDDcd001671.01E-1092134No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2292137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKLQTSKQQQ LGKTKKMAIE AAGKKKGEYS CGVVRRKGPW TEQEDMKLVW FVRLFGERRW  60
DFLAKVSGLN RSGKSCRLRW VNYLHPDLKR GRMSPDEERL VVELHARWGN RWSRIARSMP  120
GRTDNEIKNY WRTHTRKLKH KHHRQEEEED DTKAATSASA CTSTSAATLS PSSTSSSSDD  180
AQGEEAASKE DALLYAGAMD DDQLLWNDDG INAYASWSGG LGATSSMMMV PSSPVWQWDE  240
HYCCSTDSLW GHDEVFEYKK MLHSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26371374103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G002900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1913461e-120JN191346.1 Triticum aestivum MYB13-2 mRNA, complete cds.
GenBankJX1836171e-120JX183617.1 Triticum aestivum MYB protein (MYB56) mRNA, MYB56-B allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232888.11e-139transcription factor MYB59 isoform X2
TrEMBLI1HVT51e-138I1HVT5_BRADI; Uncharacterized protein
STRINGBRADI2G62510.11e-138(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-57myb domain protein 59