PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009152116.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 344aa    MW: 38515 Da    PI: 9.7982
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009152116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-1364112155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+ +++g
  XP_009152116.1  64 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAHRFRG 112
                     689***9788.8*********3.....5************************998 PP
2B395.82.8e-30189293199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+ tpsd+++++r v+pk+ ae+h      g ++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + Fk+++ ++
  XP_009152116.1 189 FEKAVTPSDAGELNRXVIPKHQAEKHfplplsGDVSVRGTLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNGQD 283
                     89******************************99999****************************************************987799 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l++++ +k
  XP_009152116.1 284 QQLYIGWKSK 293
                     9999999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1764121IPR016177DNA-binding domain
PfamPF008478.6E-964112IPR001471AP2/ERF domain
CDDcd000186.51E-2664122No hitNo description
Gene3DG3DSA:3.30.730.101.1E-2065120IPR001471AP2/ERF domain
SMARTSM003802.7E-2865126IPR001471AP2/ERF domain
PROSITE profilePS5103220.38965120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-36182297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-28187297IPR015300DNA-binding pseudobarrel domain
CDDcd100176.22E-26188281No hitNo description
SMARTSM010194.9E-23189294IPR003340B3 DNA binding domain
PfamPF023622.3E-26189293IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155189294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDAASSVDES STSTDSVHTP AKIPPATARK SPSPASLYRM GSGSSVVLDS ENGVEAESRK  60
LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA RAYDVAAHRF RGRDAVTNFK  120
ADTTLGNGDE VEFLNAHSKA EIVDMLRKHT YKEELEQRKR NLHGKGNTKE TAFAAVRVAT  180
GFKTAETLFE KAVTPSDAGE LNRXVIPKHQ AEKHFPLPLS GDVSVRGTLL NFEDVNGKVW  240
RFRYSYWNSS QSYVLTKGWS RFVKEKRLCA GDLISFKRSN GQDQQLYIGW KSKSESDQDT  300
GRVVVRLFGV DITSLKSQSD VVMKEETEML SLRCNKKQRL VTTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-6518530010124DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.22970.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009152116.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009152116.10.0PREDICTED: LOW QUALITY PROTEIN: AP2/ERF and B3 domain-containing transcription factor ARF14
SwissprotQ9LS061e-180RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A397ZAC80.0A0A397ZAC8_BRACM; Uncharacterized protein
STRINGBra025159.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-174ethylene response DNA binding factor 3