PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 335aa MW: 36513.8 Da PI: 8.2721 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 82 | 105 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +kt+lC+ f++ GtC+y +C+FaH XP_009151425.1 82 FKTKLCCKFRA-GTCPYVTNCNFAH 105 69*********.************* PP | |||||||
2 | zf-CCCH | 18.3 | 4.1e-06 | 149 | 172 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C+ f+ C+yG++C+F+H+ XP_009151425.1 149 GRHCKKFYTEEGCPYGESCSFMHD 172 5669*****9*************7 PP | |||||||
3 | zf-CCCH | 42.8 | 8.5e-14 | 211 | 236 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_009151425.1 211 WKTRICNKWEITGYCPFGAKCHFAHG 236 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-13 | 79 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-8 | 79 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.671 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0039 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-7 | 82 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.68 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-6 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-8 | 147 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-17 | 204 | 240 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-10 | 206 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-9 | 210 | 237 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.178 | 210 | 238 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-11 | 211 | 236 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MSHHRRDSGG DVVHVIPTNN PPPENWFPNV GDSAVWATED DYNRVWAVNP DGENGPPNKK 60 SRGSPSSSAA SNRTKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHTVEEL RRPPPNWQEI 120 VAGTPTTVEQ REEFQIPSTA DESGRSFKGR HCKKFYTEEG CPYGESCSFM HDEASRNRES 180 VAISLGPAGY GNSNLLVLGG IGIQIVKPSN WKTRICNKWE ITGYCPFGAK CHFAHGAAEL 240 HRFGGGLVEG QGKDGISPNP DVKQTGPNPK GHSDTTTTLL SPGLPHHSDA GYHSGVALQR 300 ASSAVTQKPG IRTLQKWKGP GKISLIYGDW IDDIE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.2980 | 0.0 | flower| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151425.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189255 | 1e-135 | AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151425.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q9LQM3 | 0.0 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | M4D106 | 0.0 | M4D106_BRARP; Uncharacterized protein | ||||
STRING | Bra010155.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 0.0 | C3H family protein |