PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151358.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 314aa    MW: 36106.9 Da    PI: 5.1925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.71.1e-40410332129
             NAM  32 evikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123
                     +vik+vd+yk+ePwd+++   + ++ee+ewyfFs++dkky+tg+r+nrat sg+Wkatg+dk+++s k+elvg++ktLvfykgrap+g+k+dW+m
  XP_009151358.1   4 DVIKDVDLYKIEPWDIQElcgRGTGEEREWYFFSHKDKKYPTGTRTNRATCSGFWKATGRDKAIYS-KQELVGMRKTLVFYKGRAPNGQKSDWIM 97 
                     78**************954555555788**************************************.999************************* PP

             NAM 124 heyrle 129
                     heyrle
  XP_009151358.1  98 HEYRLE 103
                     ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.0271123IPR003441NAC domain
SuperFamilySSF1019418.11E-453123IPR003441NAC domain
PfamPF023651.3E-1527102IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0010981Biological Processregulation of cell wall macromolecule metabolic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0090058Biological Processmetaxylem development
GO:0005634Cellular Componentnucleus
GO:0009531Cellular Componentsecondary cell wall
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQVDVIKDVD LYKIEPWDIQ ELCGRGTGEE REWYFFSHKD KKYPTGTRTN RATCSGFWKA  60
TGRDKAIYSK QELVGMRKTL VFYKGRAPNG QKSDWIMHEY RLETDENGPP HEEGWVVCRA  120
FKKKLTTMMN YNNPRTMMGS SSSGQESNWF VQQMDVANGS YYHLPDLESP KMFQASSSLL  180
HHNDNDPYGV VLSTINTTPT TLMQGDDQVD HGQVITNDDV HMIMMNTNTD HHHQSGLRLN  240
DDHNDQVMDW QTLDKFVASQ LIMSQEDEEV NKDPSDNSNE TFHHLSEEQA TMVSMNASPS  300
SPCSFYSWSQ NTHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-37112444166NO APICAL MERISTEM PROTEIN
1ut4_B7e-37112444166NO APICAL MERISTEM PROTEIN
1ut7_A7e-37112444166NO APICAL MERISTEM PROTEIN
1ut7_B7e-37112444166NO APICAL MERISTEM PROTEIN
3swm_A8e-37112447169NAC domain-containing protein 19
3swm_B8e-37112447169NAC domain-containing protein 19
3swm_C8e-37112447169NAC domain-containing protein 19
3swm_D8e-37112447169NAC domain-containing protein 19
3swp_A8e-37112447169NAC domain-containing protein 19
3swp_B8e-37112447169NAC domain-containing protein 19
3swp_C8e-37112447169NAC domain-containing protein 19
3swp_D8e-37112447169NAC domain-containing protein 19
4dul_A7e-37112444166NAC domain-containing protein 19
4dul_B7e-37112444166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem, especially newly proliferating cells derived presumably from pericycle. {ECO:0000269|PubMed:16103214}.
UniprotTISSUE SPECIFICITY: Expressed in root inner metaxylem vessels and in hypocotyl vessels (PubMed:18445131, PubMed:18952777). Present in root developing xylems (PubMed:16103214). Accumulates in the xylem but not in interfascicular fibers or pith cells in inflorescence stems. Absent from secondary xylem in roots (PubMed:18952777). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', and to the tracheary elements (TE) specific regulating cis-element (TERE), 5'-CTTNAAAGCNA-3', in the promoter of target genes (e.g. genes involved in secondary wall biosynthesis, cell wall modification such as xylan accumulation, and programmed cell death) (PubMed:20935069, PubMed:20952636, PubMed:20488898). Involved in xylem formation in roots and shoots, especially regulating metaxylem vessel differentiation by promoting immature xylem vessel-specific genes expression, especially genes regulating programmed cell death (PCD) and secondary wall formation in tracheary elements (TE) (PubMed:16103214, PubMed:20952636, PubMed:20488898). Can activate MYB25, MYB46, MYB58, MYB63, MYB83, MYB103, CESA4, LBD15, LBD30, ERF115, XCP1, XCP2, NAC010/SND3, KNAT7, ASL19 and ASL20 expression (PubMed:17890373, PubMed:18952777, PubMed:19088331, PubMed:19122102, PubMed:19808805, PubMed:20935069, PubMed:20952636). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:20488898, ECO:0000269|PubMed:20935069, ECO:0000269|PubMed:20952636}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00578DAPTransfer from AT5G62380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151358.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids (e.g. brassinolide BL), auxin (e.g. 2,4-dichlorphenoxyacetic acid 2,4-D) and cytokinin (e.g. kinetin), with a synergistic effect (PubMed:16103214). Accumulates during infection by the soilborne fungal pathogen Verticillium longisporum, especially in tissues undergoing de novo xylem formation (PubMed:23023171). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:23023171}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0265100.0BT026510.1 Arabidopsis thaliana At5g62380 mRNA, complete cds.
GenBankDQ0567340.0DQ056734.1 Arabidopsis thaliana no apical meristem family protein (At5g62380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151357.10.0PREDICTED: NAC domain-containing protein 101 isoform X1
RefseqXP_009151359.10.0PREDICTED: NAC domain-containing protein 101 isoform X2
SwissprotQ9LVA10.0NC101_ARATH; NAC domain-containing protein 101
TrEMBLM4D0S80.0M4D0S8_BRARP; Uncharacterized protein
STRINGBra010077.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.10.0NAC-domain protein 101
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]