PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009151258.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 341aa MW: 37913.4 Da PI: 10.0271

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009151258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.4	9.2e-31	275	332	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh XP_009151258.1 275 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHA 332 9***********************988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.0E-15	234	271	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.3E-33	261	333	IPR003657	WRKY domain
PROSITE profile	PS50811	29.333	268	334	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	271	332	IPR003657	WRKY domain
SMART	SM00774	5.5E-37	273	333	IPR003657	WRKY domain
Pfam	PF03106	1.9E-26	275	331	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEEVEAANKE AVESCHGVLN LLSQQTSDPK SLLVETREAV IKFKRVTSLL TRGLGGQRKI 60 KKLNNNYYKF MSPLLPQYIF LESPICSNNA ITGCTPVLAP KPLQVIPPAA PSYGEQRPVH 120 PPPMMLNQRM CVDKSFLELK PPSLRAVDQK PYQFIRNHQQ GVYYRSNSGL NLKFDGSGGG 180 GSCYSPSVSN GSRSFVSSLS MDGSVTDYDR NSFHLIGLPQ GSDHMSQHSR RTSCSGSLKC 240 GNKSKCHCSK KRKLRVKRSI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS 300 SVRGCPARKH VERCVDETSM LIVTYEGEHN HARISSQSAH T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	261	331	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009151258.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU912416	0.0	EU912416.1 Brassica napus WRKY74-1 transcription factor (WRKY74-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151258.1	0.0	PREDICTED: probable WRKY transcription factor 74 isoform X1
Refseq	XP_009151259.1	0.0	PREDICTED: probable WRKY transcription factor 74 isoform X1
Swissprot	Q93WU6	0.0	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	M4D0K7	0.0	M4D0K7_BRARP; Uncharacterized protein
STRING	Bra010005.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	0.0	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]