PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22776.2 Da PI: 8.8966 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.3 | 4.9e-19 | 10 | 54 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ien++ r++tf kR+ gi+KKA ELS+LCd+ +av + s+ + + XP_009151152.1 10 YIENETSRKTTFRKRKGGIMKKALELSTLCDVPIAVFVQSEYNSV 54 59**************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.83E-23 | 1 | 86 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.353 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.69E-24 | 2 | 86 | No hit | No description |
PRINTS | PR00404 | 1.8E-13 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-17 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-13 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-13 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MTRNRVKMAY IENETSRKTT FRKRKGGIMK KALELSTLCD VPIAVFVQSE YNSVPEVFPP 60 SRQAMGNMLV KWEKLSLVEK TKKMMNQEQF IQQRITKATE SCKKVAKENK ELAMKEVMYD 120 CLRGDNAPCN LDEDELRDLG GVIDQYIKGL NRRIQVLMKD HASSSTSVVP DAAAAAAAVA 180 MPTAEMGSSS NVKDFDLNQT QSE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151152.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151152.1 | 1e-151 | PREDICTED: MADS-box transcription factor PHERES 2 | ||||
Refseq | XP_013647266.1 | 1e-151 | MADS-box transcription factor PHERES 2-like | ||||
TrEMBL | A0A397Z1M1 | 1e-150 | A0A397Z1M1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D0B5 | 1e-150 | M4D0B5_BRARP; Uncharacterized protein | ||||
STRING | Bra009913.1-P | 1e-150 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 7e-54 | M-type_MADS family protein |