PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150941.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 313aa    MW: 35530.2 Da    PI: 6.7998
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.15.6e-26121183159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                     ldDg++WrKYGqK++ g++fpr+YYrCt++   +C+++k+v+rs+e+ ++ +ei Y+g H ++
  XP_009150941.1 121 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqRCEATKQVQRSNENHQMlFEISYRGIHSCS 183
                     59***************************98889***********99987479*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-24118184IPR003657WRKY domain
SuperFamilySSF1182906.02E-22120184IPR003657WRKY domain
PROSITE profilePS5081118.154121171IPR003657WRKY domain
SMARTSM007742.1E-36121184IPR003657WRKY domain
PfamPF031061.2E-24122182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MERKSNSGEW EKMKKEISEL MTEGRDYAHE LKFQLGSSSS DQESREHLAK KILESYHKSL  60
TIMNHPAELD QVSPHIHGGG SPKSDDSDQE PHQNIKSSKK SMPRWTEKVR ITPGAEIDRT  120
LDDGFSWRKY GQKDILGAKF PRGYYRCTYR KSQRCEATKQ VQRSNENHQM LFEISYRGIH  180
SCSQAANVRS AIPVRVLEPN QPQEHENLEM VKESLDAGHH NYNHQAHLHQ TLQYHLSSTP  240
TLESNNMMLQ LADQNIDLFG STSFSSDLGA NVNYDYLASH SVGSVSHSTS NSPSESPFES  300
FDPNNPFKGF GGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-171211801474Disease resistance protein RRS1
5w3x_D2e-171211801474Disease resistance protein RRS1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150941.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300470.0KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643451.10.0probable WRKY transcription factor 30
SwissprotQ9FL621e-155WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLM4CZT70.0M4CZT7_BRARP; Uncharacterized protein
STRINGBra009734.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-149WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  2. Kanofsky K,Bahlmann AK,Hehl R,Dong DX
    Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
    Plant Cell Rep., 2017. 36(6): p. 971-986
    [PMID:28341984]