PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009149369.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 329aa MW: 35736.7 Da PI: 9.0988

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009149369.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.1	4.8e-30	39	98	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ XP_009149369.1 39 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHNHP 98 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-29	37	100	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-26	38	100	IPR003657	WRKY domain
PROSITE profile	PS50811	27.852	39	100	IPR003657	WRKY domain
SMART	SM00774	3.3E-35	39	99	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	40	98	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MEKDDFLKSR HGGEERHAEM RKLDASHDDP HQDIIRSKMN DGCQWRKYGQ KIAKGNPCPR 60 AYYRCTIAPS CPVRKQVQRC SEDMSILIST YEGTHNHPLP LSATAMASAT SAAASMLLSG 120 ASSSSSAAAA DLHGLNFSLS GNSNIPKPKS PFLQTSSSGH PTVTLDLTTS SSSQQPFLSM 180 LNRFSAPPSN VSRSNSYPST NLNFSNSTNT LMNWGGVGNR NEQYRAAYGN ISTLQQSPYH 240 HVIQTRIAGS SLDPFGRSSS YSPHPTQTNL DYVGIKSITH QVQYLPAETI KAITTNSNFQ 300 SALATALSSI MGTDVKMDNV TRNEAEKSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	31	100	6	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009149369.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149369.1	0.0	PREDICTED: probable WRKY transcription factor 61 isoform X1
Refseq	XP_013724569.1	0.0	probable WRKY transcription factor 61
Refseq	XP_022559662.1	0.0	probable WRKY transcription factor 61
Swissprot	Q8VWV6	1e-156	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A397YX01	0.0	A0A397YX01_BRACM; Uncharacterized protein
STRING	Bra025693.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	1e-130	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]