PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009148838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 450aa MW: 49289.3 Da PI: 8.7277 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F r nL+ H r H XP_009148838.1 77 FQCEVCQKGFQREQNLQLHRRGH 99 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.78E-6 | 76 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-6 | 76 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0044 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.053 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 52 | 118 | 148 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.8E-4 | 145 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.78E-6 | 149 | 174 | No hit | No description |
SMART | SM00355 | 130 | 154 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 450 aa Download sequence Send to blast |
MSSSYNNTIS SSSTQSFPLL AIGANNFNRE ETAMTMNQRP NSVSPPPRRL RNKPGNPSPD 60 AEVIALSPEE IMATNRFQCE VCQKGFQREQ NLQLHRRGHN LPFNLKQKSD EQVRRKVYVC 120 PEPTCVYHDP SRALGDLTGI KKHYYRKHGD EKKFKCEKCN KFYAVESDCK AHFKNCGTKE 180 YRCVCGTKFS RSDSYETHRA FCEALARESA GNPNLSFTEM LAAAGGSDGS SRHGLYGGAS 240 SGLSHNHFGD NSNSGFAPPA AGFNLNRSSS PKFEDFFPQS TNPNHGPTTN FPMQYPSNQG 300 LLARNDQNLM NQHGLINSNN NNNNLFNPGY FQANTQNLSD QTGGPPLFHH ADNNVPSALL 360 RGSSMAANNF GGSGNANSQG QMNSLAATSG HQGRPGSSIF DHRLGNNLSI GGPDRRTLDF 420 LGVNGRGGRN EPPLDLDMKF SDPNNPFGNV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-22 | 151 | 216 | 4 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 1e-22 | 151 | 216 | 4 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009148838.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189499 | 0.0 | AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009148837.1 | 0.0 | PREDICTED: protein indeterminate-domain 6, chloroplastic-like isoform X1 | ||||
Refseq | XP_009148838.1 | 0.0 | PREDICTED: protein indeterminate-domain 6, chloroplastic-like isoform X2 | ||||
Swissprot | Q8RWX7 | 0.0 | IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic | ||||
TrEMBL | M4EBP5 | 0.0 | M4EBP5_BRARP; Uncharacterized protein | ||||
STRING | Bra026204.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-167 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|