PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148837.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 450aa    MW: 49289.3 Da    PI: 8.7277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-057799123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C k F r  nL+ H r H
  XP_009148837.1 77 FQCEVCQKGFQREQNLQLHRRGH 99
                    89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-67699No hitNo description
Gene3DG3DSA:3.30.160.602.8E-67699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00447799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0537799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM0035552118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4145174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.78E-6149174No hitNo description
SMARTSM00355130154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSSSYNNTIS SSSTQSFPLL AIGANNFNRE ETAMTMNQRP NSVSPPPRRL RNKPGNPSPD  60
AEVIALSPEE IMATNRFQCE VCQKGFQREQ NLQLHRRGHN LPFNLKQKSD EQVRRKVYVC  120
PEPTCVYHDP SRALGDLTGI KKHYYRKHGD EKKFKCEKCN KFYAVESDCK AHFKNCGTKE  180
YRCVCGTKFS RSDSYETHRA FCEALARESA GNPNLSFTEM LAAAGGSDGS SRHGLYGGAS  240
SGLSHNHFGD NSNSGFAPPA AGFNLNRSSS PKFEDFFPQS TNPNHGPTTN FPMQYPSNQG  300
LLARNDQNLM NQHGLINSNN NNNNLFNPGY FQANTQNLSD QTGGPPLFHH ADNNVPSALL  360
RGSSMAANNF GGSGNANSQG QMNSLAATSG HQGRPGSSIF DHRLGNNLSI GGPDRRTLDF  420
LGVNGRGGRN EPPLDLDMKF SDPNNPFGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-22151216469Zinc finger protein JACKDAW
5b3h_F1e-22151216469Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148837.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894990.0AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148837.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like isoform X1
RefseqXP_009148838.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like isoform X2
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLM4EBP50.0M4EBP5_BRARP; Uncharacterized protein
STRINGBra026204.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-167C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]