PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148218.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 264aa    MW: 30101.7 Da    PI: 7.9106
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148218.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.57e-1330701549
                    H.....HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEE CS
          SRF-TF 15 k.....RrngilKKAeELSvLCdaevaviifsstgkl.yey 49
                    k     R ++ilKKA ELS+LCd +++vi +  +g+l  +y
  XP_009148218.1 30 KpflllREKTILKKALELSILCDNDICVIHYDREGNLvNTY 70
                    44444499***********************9999872456 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00511172IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-1423107IPR002100Transcription factor, MADS-box
PfamPF003191.9E-73666IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.4613673IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MNSLSSSASS STRMKNNNKL SVRNQTRFKK PFLLLREKTI LKKALELSIL CDNDICVIHY  60
DREGNLVNTY PEDQCQVKDI LERYNNLSDT EKIKKNTNLS QFYNKKLVDE KRRSLTDAEE  120
RKRFTKKVGE FKGSLEHKLQ IVKDRVRDLL YSQSTCLDVM SEQNHNVPAS SSGFVFPNEL  180
SDPRMNFTPH DLDQQQSFTS LLMSGDHVSA NTDQYLLSPA SCATDSSNHE SKFSVFVFNH  240
ETATFTQLPN SASSSFDQGL IGTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148218.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148218.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLM4DQE80.0M4DQE8_BRARP; Uncharacterized protein
STRINGBra018741.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.11e-41AGAMOUS-like 89