PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009148198.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 337aa MW: 38511.6 Da PI: 6.5786

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009148198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	169	188	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_009148198.1 169 FSCPLCFKTFNRYNNMQMHM 188 89*****************9 PP
2	zf-C2H2	13.1	0.00029	253	275	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ XP_009148198.1 253 FACRRCGKAFAVKGDWRTHEKNC 275 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	169	196	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-5	169	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	171	191	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.99E-6	235	273	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	239	273	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.767	253	273	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MSNPAYSNLF NNGFDNTNFN CSTSLSYIYN SHNSFYYPNT TNPNYMAPTT STFPNSPPLR 60 EALPLLSLSP IRHQEQQDQQ FMDTDQISSS KFLDYPHDVT VDLHLGLPNY GVGGSYIAHV 120 ATTDEQDDDQ GVEVTVDSHL HDDDDGDLHR DHHYWIPTPD QILMGPTQFS CPLCFKTFNR 180 YNNMQMHMWG HGSQYRKGPE SLRGTQPTGM LRLPCYCCAP GCKNNIDHPR TKPLKDFRTL 240 QTHYKRKHGS RPFACRRCGK AFAVKGDWRT HEKNCGKLWY CSCGSDFKHK RSLKDHVKAF 300 GNDHIPCAID NFGGDHEDYY EAASDIQQQD DCNTNEC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009148198.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ311810	0.0	AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009148198.1	0.0	PREDICTED: zinc finger protein WIP5-like
Swissprot	Q8W031	0.0	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A397YW48	0.0	A0A397YW48_BRACM; Uncharacterized protein
TrEMBL	A0A3P5YP69	0.0	A0A3P5YP69_BRACM; Uncharacterized protein (Fragment)
TrEMBL	M4DQV9	0.0	M4DQV9_BRARP; Uncharacterized protein
STRING	Bra018902.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	0.0	WIP domain protein 5

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]