PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009148039.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 240aa MW: 26609.4 Da PI: 5.2848

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009148039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134	5.7e-42	67	166	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r+da++s+vyeA ar+rdP+yG++g i +lq+q+++l+a+la XP_009148039.1 67 PCAACKILRRRCGDKCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQELPESQRTDAVNSMVYEAGARIRDPIYGCAGAIYNLQRQVSELQAQLA 161 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e XP_009148039.1 162 KAQVE 166 99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.973	66	167	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.2E-42	67	164	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MASFMMSGGH LTLSIYTTYL PKSTSPSKHL IMLDMESKCD ASAAIISASP TSSPPPPQLS 60 PRLVLSPCAA CKILRRRCGD KCVLAPYFPP TEPAKFTIAH RVFGASNIIK LLQELPESQR 120 TDAVNSMVYE AGARIRDPIY GCAGAIYNLQ RQVSELQAQL AKAQVEIVSM QLQRSNLLEL 180 IHNMDQPNQE QHNMSFDSSF GNCDEFISSP DEESNDFGFI EDNKYSNTIP STLWCDPLWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-41	66	168	10	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-41	66	168	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009148039.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473841	1e-130	AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009148039.1	1e-180	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9SK08	1e-100	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A291LQX5	1e-179	A0A291LQX5_BRARR; Transcription factor LBD1a
STRING	Bo5g008590.1	1e-153	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	4e-99	LOB domain-containing protein 11