PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009147935.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 632aa MW: 71064.6 Da PI: 8.4929

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009147935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9e-06	229	249	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++Cr+fa C+ G +C+F+H XP_009147935.1 229 VPCRYFAL-RNCRNGTSCRFSH 249 699999.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.831	225	253	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence Send to blast
MSSSGRKRVS KWDAKQEATE NGNDYVEKSG SYYHDKDPEH AGFYPEGNGR NGSSRRSVPD 60 DDDNDDERLK SRQQHQGEAW PSRSRVSHDE GDDAMMSYYD TRKSSEQDET RQPYWDRPRT 120 RRSGSRSNSR SMSRSRSRSP LQRVRRDARG SYDRHKTRDT DGRYSRAGDY NDRDTKYYTE 180 DSREQYPLRR SDYPEDHSNS RREASDPILR SHRDRRDVPE REYNRVSNVP CRYFALRNCR 240 NGTSCRFSHH GAPPARRSPE RKPQDQMFSS GTTERMRNSH RWNERSDTGK SCEGSKGNNN 300 NNNNGSWIGD MEMSPDWNYG VKTLKKPLNE EHSVVKDTLA PGSAAISHSH HGFSNNIIAN 360 SAPPVQAFNQ KIENHSAVPY QSTPLAVGGS QVLPPPPPPA VTTNLPESGI AQSTVSREEL 420 NHISNISASL AQFFGNGQPI PQLQSTLNPK ETMQVPEVYG KEQQSSLAQS DLLSNNSIQT 480 GVVPAVQILN SDTLIAGNPK ASEEEASKEP DVRKTEQEGG ETTGKDVEEE EEEDDGAGDE 540 NSKKEKDPKG MKAFKFALVE IVKELLKPAW KEGGMNKDAY KNIVKKAVDK VTGAIQTGNI 600 PQTQEKIDHY LSASKPKLTK LVQAYISKVK KS

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence Send to blast

MSSSGRKRVS KWDAKQEATE NGNDYVEKSG SYYHDKDPEH AGFYPEGNGR NGSSRRSVPD  60
DDDNDDERLK SRQQHQGEAW PSRSRVSHDE GDDAMMSYYD TRKSSEQDET RQPYWDRPRT  120
RRSGSRSNSR SMSRSRSRSP LQRVRRDARG SYDRHKTRDT DGRYSRAGDY NDRDTKYYTE  180
DSREQYPLRR SDYPEDHSNS RREASDPILR SHRDRRDVPE REYNRVSNVP CRYFALRNCR  240
NGTSCRFSHH GAPPARRSPE RKPQDQMFSS GTTERMRNSH RWNERSDTGK SCEGSKGNNN  300
NNNNGSWIGD MEMSPDWNYG VKTLKKPLNE EHSVVKDTLA PGSAAISHSH HGFSNNIIAN  360
SAPPVQAFNQ KIENHSAVPY QSTPLAVGGS QVLPPPPPPA VTTNLPESGI AQSTVSREEL  420
NHISNISASL AQFFGNGQPI PQLQSTLNPK ETMQVPEVYG KEQQSSLAQS DLLSNNSIQT  480
GVVPAVQILN SDTLIAGNPK ASEEEASKEP DVRKTEQEGG ETTGKDVEEE EEEDDGAGDE  540
NSKKEKDPKG MKAFKFALVE IVKELLKPAW KEGGMNKDAY KNIVKKAVDK VTGAIQTGNI  600
PQTQEKIDHY LSASKPKLTK LVQAYISKVK KS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009147935.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009147935.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like
TrEMBL	M4DQG6	0.0	M4DQG6_BRARP; Uncharacterized protein
STRING	Bra018759.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9160	12	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-17	C3H family protein