PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009147920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 297aa MW: 32697.7 Da PI: 9.291 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 1.9e-10 | 7 | 54 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45 W+ eE++ + +a++ + g +W++ a+t++ ++tl+q+k ++q XP_009147920.1 7 TWSREEEKSFENAIAIHCVGeeiteeQWSKMASTVP-TKTLEQVKKHYQ 54 6****************99999**************.***********9 PP | |||||||
2 | Myb_DNA-binding | 42.3 | 1.7e-13 | 129 | 173 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky XP_009147920.1 129 PWTEEEHRLFLLGLEKFGKGDWRSISRNFVITRTPTQVASHAQKY 173 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.497 | 3 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-4 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-6 | 6 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-7 | 7 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.82E-7 | 7 | 57 | No hit | No description |
SuperFamily | SSF46689 | 4.02E-9 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.271 | 122 | 178 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.73E-17 | 124 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-17 | 126 | 176 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.9E-11 | 126 | 176 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-11 | 127 | 172 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.93E-11 | 129 | 174 | No hit | No description |
Pfam | PF00249 | 4.4E-12 | 129 | 173 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MESVAVTWSR EEEKSFENAI AIHCVGEEIT EEQWSKMAST VPTKTLEQVK KHYQILLEDV 60 KAIENGQVPL PRYHRTGDEA AEASPANRDY HASGGSGSPE KKPNHGVSGT NGGGRSGSRH 120 EQERRKGIPW TEEEHRLFLL GLEKFGKGDW RSISRNFVIT RTPTQVASHA QKYFIRLNSM 180 NRDRRRSSIH DITSVNNQAS AVTGQQQQVA KPRPAQPQPH HPTMAGVGMY GSAPVGQPII 240 APPDHMGSAV GTPVMLPPPM GAHHHHHPHH LGVAPYAVPA YPVPPIPQQH PTPSTMH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-14 | 8 | 77 | 11 | 77 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.25899 | 0.0 | flower| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00191 | DAP | Transfer from AT1G49010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009147920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086906 | 5e-91 | AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence. | |||
GenBank | AY519528 | 5e-91 | AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds. | |||
GenBank | BT024862 | 5e-91 | BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147920.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 2e-75 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | M4DQH9 | 0.0 | M4DQH9_BRARP; Uncharacterized protein | ||||
STRING | Bra018772.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10304 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 1e-123 | MYB family protein |
Publications ? help Back to Top | |||
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