PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146778.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 325aa    MW: 37039.2 Da    PI: 10.013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.6e-143672293
                    H.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3 22 faeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                    f+++h  g  +e +  +tl++  s ++Wevk+  ++++    lt+GW++F++ +gL++gD+v+F++dg+     +
  XP_009146778.1  3 FFSKHirGTTNEDNAVVTLTSdASDKTWEVKM--DGRR----LTRGWQNFANGHGLRVGDIVIFRRDGD--L--L 67
                    6677777545556667777775888*******..9998....***********************6653..2..3 PP
2B370.81.8e-22114208399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + +++++l++++l lp+ f +++g+ +++  +++l +e+g+ W+v ++y k+ gr+++++GW++F+++n+ +++D ++Fkl++ +++++v++++
  XP_009146778.1 114 VARVTASNLSRDMLFLPRGFSRSNGLTNRK-CEIILLNEDGKPWKVFMSYHKTHGRVYIRTGWRRFCRQNRRRSNDLLTFKLVE-TGTKPVLQLC 206
                     5668999*****************998655.6*************************************************998.88889*9999 PP

                     -S CS
              B3  98 rk 99 
                     ++
  XP_009146778.1 207 SS 208
                     75 PP
3B3536.2e-17226314191
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f++ ++++++l+++ l+lp  f++++g+ +++  +++l d+ g + +  l+ +++ g++ ++kGW+e +kang+k+g++++++l+++++++
  XP_009146778.1 226 FLTLTLTPYSLRKSKLCLPAAFLKSNGITNAR--KIILVDRYGIKRTTSLKPDNNNGAMRMGKGWRELCKANGVKAGESFTLELIKEEGET 314
                     67788899******************988555..8********999999988********************************9864443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.957176IPR003340B3 DNA binding domain
SMARTSM010193.5E-8376IPR003340B3 DNA binding domain
PfamPF023626.9E-9665IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-171483IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-151682IPR015300DNA-binding pseudobarrel domain
CDDcd100179.97E-111873No hitNo description
Gene3DG3DSA:2.40.330.101.6E-22106208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-23108211IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.424112208IPR003340B3 DNA binding domain
CDDcd100171.75E-16112207No hitNo description
SMARTSM010192.3E-25112209IPR003340B3 DNA binding domain
PfamPF023624.8E-21114208IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-18219323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-18223321IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-15225313No hitNo description
PfamPF023621.9E-15226316IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59226322IPR003340B3 DNA binding domain
SMARTSM010191.1E-20226325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTFFSKHIRG TTNEDNAVVT LTSDASDKTW EVKMDGRRLT RGWQNFANGH GLRVGDIVIF  60
RRDGDLLFHV TSFGPSCCQI LYDDVIQVFS DSDSEKYHQD TREEGSPSDN SCFVARVTAS  120
NLSRDMLFLP RGFSRSNGLT NRKCEIILLN EDGKPWKVFM SYHKTHGRVY IRTGWRRFCR  180
QNRRRSNDLL TFKLVETGTK PVLQLCSSVY NRDCLRDSSS TSQDRFLTLT LTPYSLRKSK  240
LCLPAAFLKS NGITNARKII LVDRYGIKRT TSLKPDNNNG AMRMGKGWRE LCKANGVKAG  300
ESFTLELIKE EGETATHLLK FCTKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146778.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A078F9V00.0A0A078F9V0_BRANA; BnaA05g27890D protein
TrEMBLM4F1C30.0M4F1C3_BRARP; Uncharacterized protein
STRINGBra034869.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.11e-74B3 family protein