PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009146562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 32088.1 Da PI: 8.7441 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.3 | 8.8e-51 | 18 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhP+d+elv++yL k+ +++ + v+ evd++k+ePwd+p +++ + kewyf+s++d+kyatg+r+nrat++gyWkatgkd+ XP_009146562.1 18 LPPGFRFHPRDDELVCDYLVKRNVRSRYQP-VVLIEVDLNKCEPWDIPlIncteSARVGGKEWYFYSQKDRKYATGQRTNRATATGYWKATGKDR 111 79*****************99977777666.5899************95355554444889********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +g+lvg++ktLvfy+grapkg+ktdWvmhe+rl XP_009146562.1 112 AIQR-NGSLVGMRKTLVFYRGRAPKGRKTDWVMHEFRL 148 **99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-58 | 10 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.687 | 18 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-25 | 19 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEAEEENKGS ISMVEAKLPP GFRFHPRDDE LVCDYLVKRN VRSRYQPVVL IEVDLNKCEP 60 WDIPLINCTE SARVGGKEWY FYSQKDRKYA TGQRTNRATA TGYWKATGKD RAIQRNGSLV 120 GMRKTLVFYR GRAPKGRKTD WVMHEFRLQG TFIHHSPKEE WVLCRVFNKN NNEDEKGNNM 180 ISCSDETASA SMDSYINFDH HHHIINQQVP CFSNLSQNQI GLVYKNPNPL SINPSSDQMV 240 LKALLSQLTN NTKESQSYGE GSSESQLTDV GKPSRGAWKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-50 | 14 | 171 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009146562.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 1e-91 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 1e-91 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146562.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 isoform X1 | ||||
Swissprot | Q84TE6 | 1e-130 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M4F0W8 | 0.0 | M4F0W8_BRARP; Uncharacterized protein | ||||
STRING | Bra034713.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 1e-143 | NAC family protein |